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Author Topic:   Does the Darwinian theory require modification or replacement?
shadow71
Member (Idle past 2954 days)
Posts: 706
From: Joliet, il, USA
Joined: 08-31-2010


Message 286 of 760 (612125)
04-13-2011 12:00 PM
Reply to: Message 263 by Dr Adequate
04-08-2011 3:39 PM


Re: Is phenotypic plasticity magic?
Re: Is phenotypic plasticity magic?
--------------------------------------------------------------------------------
Shadow 71 writes:
Do you agree that plants have sensitivity, the power of directing the movements of their adjoinging parts, and that the brain receives impressions from the sense organs and directs their movements is consistent with the current theory?
Dr Adequate writes:
Yes, of course. That is why I have said so very emphatically.
The question is, do you deny it?
If not, then you must agree that these obvious facts, well known to Darwin himself as well as to all "neo-Darwinists", do not constitute a challenge to orthodoxy but a wholehearted agreement with it.
I was under the impression that Darwin and the "neo-Darwinists" and the current modern theories did not recognize that evolution is sensitive, that cells directed movements of their parts, that the plant cells contains "brains".
This all complies with Shapiro papers i.e.sentience in the cells, non random mutations for fitness etc. and the biocommunciative, information schools, that are moving away from the random mutation accidential evolultion hypothesis.
So no I don't deny it I agree with it.

This message is a reply to:
 Message 263 by Dr Adequate, posted 04-08-2011 3:39 PM Dr Adequate has replied

Replies to this message:
 Message 287 by jar, posted 04-13-2011 12:01 PM shadow71 has seen this message but not replied
 Message 289 by Taq, posted 04-13-2011 12:07 PM shadow71 has replied
 Message 293 by Dr Adequate, posted 04-13-2011 3:42 PM shadow71 has seen this message but not replied
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jar
Member (Idle past 414 days)
Posts: 34026
From: Texas!!
Joined: 04-20-2004


Message 287 of 760 (612126)
04-13-2011 12:01 PM
Reply to: Message 286 by shadow71
04-13-2011 12:00 PM


Re: Is phenotypic plasticity magic?
shadow71 writes:
I was under the impression that Darwin and the "neo-Darwinists" and the current modern theories did not recognize that evolution is sensitive, that cells directed movements of their parts, that the plant cells contains "brains".
Please present the plant brain to be examined.

Anyone so limited that they can only spell a word one way is severely handicapped!

This message is a reply to:
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Taq
Member
Posts: 10033
Joined: 03-06-2009
Member Rating: 5.3


Message 288 of 760 (612128)
04-13-2011 12:06 PM
Reply to: Message 280 by shadow71
04-13-2011 11:30 AM


Re: Creationist research
Where did I say QI Zheng supported Creationism? He is saying, in re the debated about, random, directed, adapative mutations, that there is no proof that random mutation is true.
He said the exact opposite. He said that random mutations should be considered the null hypothesis. Do you understand what the null hypothesis is?

This message is a reply to:
 Message 280 by shadow71, posted 04-13-2011 11:30 AM shadow71 has replied

Replies to this message:
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Taq
Member
Posts: 10033
Joined: 03-06-2009
Member Rating: 5.3


Message 289 of 760 (612129)
04-13-2011 12:07 PM
Reply to: Message 286 by shadow71
04-13-2011 12:00 PM


Re: Is phenotypic plasticity magic?
This all complies with Shapiro papers i.e.sentience in the cells, non random mutations for fitness etc. and the biocommunciative, information schools, that are moving away from the random mutation accidential evolultion hypothesis.
Shapiro never demonstrated that mutations were non-random with respect to fitness.

This message is a reply to:
 Message 286 by shadow71, posted 04-13-2011 12:00 PM shadow71 has replied

Replies to this message:
 Message 300 by shadow71, posted 04-14-2011 12:12 PM Taq has replied

Wounded King
Member
Posts: 4149
From: Cincinnati, Ohio, USA
Joined: 04-09-2003


Message 290 of 760 (612130)
04-13-2011 12:08 PM
Reply to: Message 282 by shadow71
04-13-2011 11:43 AM


Re: LURIA & DELBRUCK random mutation experiment
Am I wrong in taking from his paper that the random mutation hypothesis is not proven?
Proven is a rather imprecise phrase if you mean absolute proof in that case no, but absolute proof is rarely if ever a standard attained by scientific investigation. It also manages to staggeringly miss the point of his essay if that is the main thing you took from it.
What there is is a vast wealth of evidence showing that the overwhelming majority of mutations are random with respect to fitness. What Zheng says reflects this, given the strong evidence for random mutation being the common mode of mutation it should be our default assumption. The main point of his paper, which you seem to have entirely missed, is ...
Zheng writes:
This article does not attempt to refute the directed mutation hypothesis. However, from a mathematical point of view, this article suggests that some of the evidence accumulated to date to support the directed mutation hypothesis is weaker than was originally thought and may be invalid.
It is impossible to entirely preclude directed mutations occurring with most of the currently used approaches, except when using some instantly lethal selective agent. But there is a staggering paucity of evidence for directed mutation. At best we see evidence for natural systems which may marginally effect the probabilistic distribution of fitness effects.
TTFN,
WK
Edited by Wounded King, : Added attribution to quote

This message is a reply to:
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NoNukes
Inactive Member


Message 291 of 760 (612131)
04-13-2011 12:20 PM
Reply to: Message 279 by shadow71
04-13-2011 11:25 AM


Re: LURIA & DELBRUCK random mutation experiment
shadow71 writes:
By this definition would you agree that the hypothesis of random mutation is neither true or false. ie. not proven.
I didn't spend $45 for the paper. I have in my trial career met and worked with many experts in all fields of medicine, so I have access to many papers.
No one should agree that the hypothesis of random mutation is neither true or false based on this paper or its summary.
What you actually said about Zheng earlier is that if Zheng is correct there may be no evidence for random mutations. Your statement was wrong, and in fact nearly backwards. Can you even acknowledge that before you shift the goal posts to demand proof rather than evidence?
And apparently you still don't understand what a null hypothesis is. The null hypothesis is a test hypothesis used to show (to some degree of confidence) that your actual hypothesis (in this case directed mutation) is meaningfully demonstrated by the data. The task for the scientist is to either refute the null hypothesis (H0) or to give up on the alternative hypothesis.
An accurate statement would be that if Zheng is correct, there may be little if any evidence for directed mutation. Of course to state what Zheng actually found in detail would require reading the paper, and I haven't done that.
Your response regarding Qi Zheng's paper seems a bit coy. Have you read anything other than the summary of Zheng's paper? I can find the summary for free on the web.
Edited by NoNukes, : remove bad subscript tags

This message is a reply to:
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NoNukes
Inactive Member


Message 292 of 760 (612135)
04-13-2011 12:39 PM
Reply to: Message 281 by shadow71
04-13-2011 11:40 AM


Re: LURIA & DELBRUCK random mutation experiment
shadow71 writes:
That random mutation for fitness is not a proven hypothesis. That directed and adapative mutations do occur.
That this is admitted is exciting to me.
But as I demonstrated, Zheng admitted no such thing. You simply are unable to accurately read scientific papers. Even the directed mutations that we've discussed so far are random with respect to fitness.
Edited by NoNukes, : soften a bit

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Dr Adequate
Member (Idle past 305 days)
Posts: 16113
Joined: 07-20-2006


Message 293 of 760 (612165)
04-13-2011 3:42 PM
Reply to: Message 286 by shadow71
04-13-2011 12:00 PM


Re: Is phenotypic plasticity magic?
I was under the impression that Darwin and the "neo-Darwinists" and the current modern theories did not recognize that evolution is sensitive, that cells directed movements of their parts, that the plant cells contains "brains".
Yes, well you're under a lot of impressions.
The weird thing is that if you spent five seconds thinking about what you're saying, you'd know that you're wrong. You are under the impression "that Darwin [...] did not recognize [...] that the plant cells contains "brains"."
And yet the person whom you cite to prove "that the plant cells contains "brains"" is ... Darwin.
A man who wrote an entire book called The Power of Movement in Plants.
Which you quoted.
Now, really, how much time did you spend thinking about the proposition that a book written by Darwin 130 years ago must constitute a challenge to Darwinism?
This all complies with Shapiro papers i.e.sentience in the cells, non random mutations for fitness etc. and the biocommunciative, information schools, that are moving away from the random mutation accidential evolultion hypothesis.
Actually, what Darwin wrote "complies with" Darwinism.
The clue's in the name.
Edited by Dr Adequate, : No reason given.

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molbiogirl
Member (Idle past 2662 days)
Posts: 1909
From: MO
Joined: 06-06-2007


Message 294 of 760 (612185)
04-13-2011 5:54 PM
Reply to: Message 265 by shadow71
04-11-2011 8:19 PM


Cairns and directed mutation
I know Cairns and others have challenged the Luria & Delbuck experiment...
First, Cairns et al refuted directed mutation.
Fairly early on in our studies, Cairns and I ELIMINATED the hypothesis that mutations were directed toward a useful goal.
The second piece of evidence AGAINST directed mutation was obtained by putting a second revertible allele, a +1 frameshift in the tetA gene, close to the Lac− allele in FC40.
Emphasis added.
Source.
Second, you misunderstood Zheng. Just admit it.
He said the evidence for directed mutation is weak.

This message is a reply to:
 Message 265 by shadow71, posted 04-11-2011 8:19 PM shadow71 has replied

Replies to this message:
 Message 302 by shadow71, posted 04-14-2011 12:20 PM molbiogirl has replied

Meddle
Member (Idle past 1291 days)
Posts: 179
From: Scotland
Joined: 05-08-2006


Message 295 of 760 (612201)
04-13-2011 7:08 PM
Reply to: Message 286 by shadow71
04-13-2011 12:00 PM


Re: Is phenotypic plasticity magic?
I was under the impression that Darwin and the "neo-Darwinists" and the current modern theories did not recognize that evolution is sensitive, that cells directed movements of their parts, that the plant cells contains "brains".
As I understand it the plant meristem produces chemicals called auxins which promote cell growth and elongation. What is interesting about auxins is that they degrade in the presence of light, so the side of the plant nearest a light source experiences reduced growth compared to the side in the shade. Consequently, this asymmetrical growth causes the stem to bend towards the light source. At least that's how I remember it when I learned it in standard grade Biology in about 1993. I fail to see the intelligence in this scenario.

This message is a reply to:
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AZPaul3
Member
Posts: 8527
From: Phoenix
Joined: 11-06-2006
Member Rating: 5.2


(1)
Message 296 of 760 (612204)
04-13-2011 7:20 PM
Reply to: Message 279 by shadow71
04-13-2011 11:25 AM


Re: LURIA & DELBRUCK random mutation experiment
By this definition would you agree that the hypothesis of random mutation is neither true or false. ie. not proven.
Good God, no, I would not agree to such a stupid proposition especially in light of the way you see "true", "false" and "proven."
If I were speaking to another scientist I wouldn't have to answer since such a silly question would never be broached.
You have been here for a few months now. Have you not yet learned that Science never "proves" anything?
Have you not yet learned the reason for this philosophy?
In this case the data does not contradict the null hypothesis. This is but another point of evidence that the hypothesis holds. It does not leave you an opening for any rectally ejected alternative that comes along.
Now make the null hypothesis "directed mutations are the source of genotypic variation" and re-test. All the data contradicts this and thus this null hypotesis is rejected.
"Hypothesis testing" is but one weapon in the science arsenal. There also are the preponderance of the evidence and the self-consistant model able to make testable verifiable predictions. All of which we have for the role of random mutations in genotypic variation. None of which lend any support or efficacy to directed mutations (directed by what, by whom, how) as the source of genotypic variation.
You should know better by now, shadow.

This message is a reply to:
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NoNukes
Inactive Member


Message 297 of 760 (612219)
04-14-2011 7:03 AM
Reply to: Message 283 by shadow71
04-13-2011 11:47 AM


Re: LURIA & DELBRUCK random mutation experiment
shadow71 writes:
Shadow 71 writes:
I know Cairns and others have challenged the Luria & Delbuck experiment, but it this scientist is correct, we may have no proof of random mutations.
Dr Adequate writes:
Please quote him saying so.
Read his paper "The Origin of mutants"
Nice slight of hand. But your "this scientist" reference was to Zheng and his paper and not to Cairns and "Origin of Mutants".

This message is a reply to:
 Message 283 by shadow71, posted 04-13-2011 11:47 AM shadow71 has replied

Replies to this message:
 Message 303 by shadow71, posted 04-14-2011 12:25 PM NoNukes has replied

shadow71
Member (Idle past 2954 days)
Posts: 706
From: Joliet, il, USA
Joined: 08-31-2010


Message 298 of 760 (612251)
04-14-2011 11:56 AM
Reply to: Message 274 by Tanypteryx
04-12-2011 9:34 PM


Re: LURIA & DELBRUCK random mutation experiment
Tanypterykx writes:
Good Grief, shadow!
No wonder everyone thinks you don't know what you are talking about. Darwin's theory was Natural Selection not mutation, random or non-random. He knew there was variation in populations but he did not know what caused it or how it was passed on
.
Here is a quote from Shapiro's review paper in 2010. Is he wrong in stating Darwin hypotheiszed random changes?
Shapiro writes:
Since Darwin, three issues have been seen as central to formulating a coherent theory of evolutionary change:
(i) descent with modification (that is the inheritance of novel characters),
(ii) the origins of hereditary variation, and
(iii) the operation of natural selection.
All evolutionists accept descent with modification as fundamental to the evolutionary process, but views towards issues (ii) and (iii) have depended on the existing state of biological knowledge in each historical period.
In the 19th century, Darwin based his thinking on the observations of animal breeders and naturalists. Lacking detailed studies of inheritance, he postulated that change arose randomly as 'numerous, successive, slight variations' [2]. Applying the uniformitarian principle he learned from Charles Lyell, his professor of geology [3], Darwin extrapolated that these small changes would accumulate over long periods of time, under the guidance of natural selection, to produce major adaptive characters, such as the eye, and eventually would lead to the branching off of new species. Thus, classical Darwinism was characterized by its gradualist view of change and ascribed the major role in adaptive innovation to the positive action of natural selection in sequentially favouring ever fitter variants.
He also wrote in the paper.
Shapiro writes:
In the 20th century, evolutionists were confronted by an apparent contradiction between Darwinian gradualism and the abrupt changes in individual traits that were observed to undergo Mendelian segregations in genetic crosses. This contradiction was resolved at mid-century by the neo-Darwinian 'modern synthesis' that integrated Darwinian gradualism with mathematical population genetics [4,5]. Like Darwin, his neo-Darwinian followers postulated that the mutational process, which generated allelic variants of individual genes, has to be random in nature. In opposition to Lamarckian ideas, any possibility that organismal history could influence hereditary variation was excluded. The primary role in determining evolutionary novelty remained with natural selection.
Again stating that the neo-Darwinists aslo hypothesized random mutation.
Shapiro stated to me in reply to my e-mail to him.
Shadow 71 writes:
My question was "Has NATURAL GENETIC ENGINERING changed the modern Darwinian theory of evolution as we know it today?
Shapiro writes:
"Of course. Going from random accidents to regulated biochemical systems as the source of genetic variation is a fundamental change. It allows us to understand how outside events can trigger change (see table in my 2006 "Genome informatics" article), makes it clear how combinatorial change can occur using established adaptive components (e.g. protein domains, regulatory modules), and provides a way to investigate what kind of heuristic guidance may be operating in genome change."
Shadow71 writes:
"Do you have an opinion whether mutations are random with respect to fitness per the modern Darwinian Theory?"
Shapiro writes:
I gave examples in my 2010 article (e.g. biasing retrovirus insertion upstream of coding regions) where certain changes are non-random with respect to their potential biological utility.
Do those remakrs indicate support for random mutations? More like directed or adapatiave mutations, don't you think?
By the way I asked Shapiro for permission to post his e-mail reply to me on this board and he agreed that I could do that, so he knew he would be on record saying those things.

This message is a reply to:
 Message 274 by Tanypteryx, posted 04-12-2011 9:34 PM Tanypteryx has not replied

Replies to this message:
 Message 301 by Wounded King, posted 04-14-2011 12:15 PM shadow71 has replied
 Message 309 by NoNukes, posted 04-14-2011 2:41 PM shadow71 has replied

shadow71
Member (Idle past 2954 days)
Posts: 706
From: Joliet, il, USA
Joined: 08-31-2010


Message 299 of 760 (612252)
04-14-2011 12:08 PM
Reply to: Message 288 by Taq
04-13-2011 12:06 PM


Re: Creationist research
Taq writes:
He said the exact opposite. He said that random mutations should be considered the null hypothesis. Do you understand what the null hypothesis is?
A null hypothesis is not a proven hypothesis.
--------------------------------------------------------------------------------

This message is a reply to:
 Message 288 by Taq, posted 04-13-2011 12:06 PM Taq has not replied

shadow71
Member (Idle past 2954 days)
Posts: 706
From: Joliet, il, USA
Joined: 08-31-2010


Message 300 of 760 (612254)
04-14-2011 12:12 PM
Reply to: Message 289 by Taq
04-13-2011 12:07 PM


Re: Is phenotypic plasticity magic?
Taq writes:
Shapiro never demonstrated that mutations were non-random with respect to fitness.
He claims he did.
Shapiro writes:
I gave examples in my 2010 article (e.g. biasing retrovirus insertion upstream of coding regions) where certain changes are non-random with respect to their potential biological utility.
--------------------------------------------------------------------------------

This message is a reply to:
 Message 289 by Taq, posted 04-13-2011 12:07 PM Taq has replied

Replies to this message:
 Message 307 by Taq, posted 04-14-2011 1:50 PM shadow71 has replied

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