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Author Topic:   Evolution Requires Reduction in Genetic Diversity
RAZD
Member (Idle past 1433 days)
Posts: 20714
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(1)
Message 856 of 1034 (759432)
06-11-2015 11:27 AM
Reply to: Message 847 by mikechell
06-11-2015 7:06 AM


Re: macroevolution not impossible -- it has been observed.
Genetic adaptation IS an accident. It's NOT a "choice". If that "accident" is beneficial, it propagates through successive generations because it HELPS reproduction.
Indeed. Dawkins described evolution as a drunken stagger. It is a two-step feedback response system that is repeated in each generation:
Like walking on first one foot and then the next.
Mutations of hereditary traits have been observed to occur, and thus this aspect of evolution is an observed, known objective fact, rather than an untested hypothesis.
Different mixing of existing hereditary traits (ie Mendelian inheritance patterns) have been observed to occur, and thus this aspect of evolution is an observed, known objective fact, rather than an untested hypothesis.
Natural selection has been observed to occur, along with the observed alteration in the distribution of hereditary traits within breeding populations, and thus this aspect of evolution is an observed, known objective fact, and not an untested hypothesis
Neutral drift has been observed to occur, along with the observed alteration in the distribution of hereditary traits within breeding populations, and thus this aspect of evolution is an observed, known objective fact, and not an untested hypothesis.
Thus many processes of evolution are observed, known objective facts, and not untested hypotheses.
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Message 857 of 1034 (759433)
06-11-2015 11:40 AM
Reply to: Message 824 by Faith
06-10-2015 7:13 PM


Re: macroevolution not impossible -- it has been observed.
Faith writes:
mikechell writes:
the environment weeds out unproductive changes.
Pure ToE, purely hypothetical. If this really happened in reality nobody would survive.
This has the potential to create a great deal of confusion as it seems contradictory. How can you accept selection when it involves reduced genetic diversity but reject selection in all other contexts? Why would selection operate differently upon a trait depending upon the genetic process that produced the trait?

--Percy
EvC Forum Director

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Message 858 of 1034 (759435)
06-11-2015 11:51 AM
Reply to: Message 833 by Faith
06-11-2015 3:51 AM


Re: Evidence of adaptation (but mutation?}
Faith writes:
The usual idea is that the creature changed to adapt to the environment or in this case food source, but I suspect the creature evolved its characteristic first, due to simple change in allele frequencies brought about by a population split, and then found the food that suited its characteristic best.
I can't tell from your example if this possibility has been addressed.
Yes, it was addressed. Put simply, through analysis they identified the specific gene and the changes to the gene that provided the Swedish population with freeze tolerance, then they checked their analysis by inserting the Italian version of the gene into a Swedish population and observed that freeze tolerance was lost.
HBD's point was that these are the types of changes one would expect as different populations of the same species experience different mutations and different selection pressures.

--Percy
EvC Forum Director

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Faith 
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Posts: 35298
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Message 859 of 1034 (759436)
06-11-2015 11:59 AM
Reply to: Message 847 by mikechell
06-11-2015 7:06 AM


Re: macroevolution not impossible -- it has been observed.
Nothing in this process though is "irreversible" and does not lead to genetic dead ends.
One the gene pool has run out of variability it is at a dead end.
And if it hasn't, and acquired more genetic diversity after forming a species or subspecies, as I keep saying, that produces only scattered new traits, it still has to be subjected to the processes that reduce genetic diversity in order to arrive at a new species or subspecies.
Edited by Faith, : No reason given.

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Faith 
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Message 860 of 1034 (759437)
06-11-2015 12:01 PM
Reply to: Message 858 by Admin
06-11-2015 11:51 AM


Re: Evidence of adaptation (but mutation?}
Yes, it was addressed. Put simply, through analysis they identified the specific gene and the changes to the gene that provided the Swedish population with freeze tolerance, then they checked their analysis by inserting the Italian version of the gene into a Swedish population and observed that freeze tolerance was lost.
HBD's point was that these are the types of changes one would expect as different populations of the same species experience different mutations and different selection pressures.
In this case it must be natural selection, different versions showing up and the adapted one surviving, but nothing was said to prove it was a mutation.
Edited by Faith, : No reason given.

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Message 861 of 1034 (759438)
06-11-2015 12:02 PM
Reply to: Message 837 by Faith
06-11-2015 4:15 AM


Re: HBD:
Faith writes:
The declaration that it's all so much more complex is not evidence.
HBD didn't just declare that it's complex, he actually presented the data to you. You dismissed it claiming it was too complex for you to understand.
Instead of dismissing what you don't understand, it would greatly improve discussion if you would instead work to understand it.

--Percy
EvC Forum Director

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Faith 
Suspended Member (Idle past 1472 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 862 of 1034 (759439)
06-11-2015 12:14 PM
Reply to: Message 861 by Admin
06-11-2015 12:02 PM


Re: HBD:
What would greatly help these days is being a lot less subjected to advice, rules and other comments,.

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JonF
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Posts: 6174
Joined: 06-23-2003


Message 863 of 1034 (759440)
06-11-2015 12:20 PM
Reply to: Message 855 by Admin
06-11-2015 11:27 AM


Re: macroevolution not impossible -- it has been observed.
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JonF
Member (Idle past 196 days)
Posts: 6174
Joined: 06-23-2003


(1)
Message 864 of 1034 (759441)
06-11-2015 12:24 PM
Reply to: Message 860 by Faith
06-11-2015 12:01 PM


Re: Evidence of adaptation (but mutation?}
Yes, it was addressed. Put simply, through analysis they identified the specific gene and the changes to the gene that provided the Swedish population with freeze tolerance, then they checked their analysis by inserting the Italian version of the gene into a Swedish population and observed that freeze tolerance was lost.
HBD's point was that these are the types of changes one would expect as different populations of the same species experience different mutations and different selection pressures.
In this case it must be natural selection, different versions showing up and the adapted one surviving, but nothing was said to prove it was a mutation.
Read much?
"So they sequenced this gene (named CBF-2) and found that the Italian population had a deletion of 13 nucleotides which resulted in a stop codon and a truncated protein (sound familiar?). When they inserted the Italian CBF-2 allele into a Swedish genetic background (all other loci were of Swedish origin except the Italian CBF-2 allele) the plant lost its freeze tolerance. SO we have a Swedish CBF-2 allele that helps the plant tolerate freezing temperatures and an Italian CBF-2 allele that does not have freezing tolerance."
A deletion of 13 nucleotides is a mutation.

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Message 865 of 1034 (759443)
06-11-2015 12:31 PM
Reply to: Message 844 by Faith
06-11-2015 5:43 AM


Re: Increasing genetic diversity by a couple of neutral mutations
Faith writes:
Oy.
Let me simplify HBD's point. There's a species with a main population A and an isolated subpopulation B. Consider just one gene of this species that has alleles R, Q and S, but the S allele is missing in subpopulation B. That means the populations have these possible combinations of alleles for this gene:
Population A: RR RQ QQ RS QS SS
Population B: RR RQ QQ
Notice that population B has no allele combinations that do not exist in population A. Expressed another way, every allele combination of population B already exists in population A.
Given this information, it would be very helpful if you could answer this question:
How can population B ever be a genetically different species than population A?
Naturally it would also be very helpful if you could clarify whether you think speciation is even possible with your reduced genetic diversity approach. Everyone else already knows the answer is no, they're just waiting for you to arrive at the same conclusion.
And once you do understand that just mixing the same old alleles into new combinations cannot create genetically new species, it should also help you understand the problems with your claim that reduced genetic diversity is how evolution works. Biologists already understand that reduced genetic diversity by itself cannot create a genetically new species, so they would never propose or even consider it as the way evolution works.
AbE:
I should have commented about this:
Faith writes:
But is Population B a daughter population to A? I assume it must be but you don't say.
Here is the diagram HBD provided earlier:
And here is the description HBD provided in Message 721:
herebedragons in message 721 writes:
At this point, both subpopulation 'A' and subpopulation 'B' are the same species but live in distinct geographical regions.
So no, population B is not a daughter population of population A. But in his example HBD addresses the alleles of a specific gene to illustrate how impossible it is, at least with respect to this gene, for population B to become genetically different from population A.
Edited by Admin, : AbE.

--Percy
EvC Forum Director

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RAZD
Member (Idle past 1433 days)
Posts: 20714
From: the other end of the sidewalk
Joined: 03-14-2004


(1)
Message 866 of 1034 (759447)
06-11-2015 1:14 PM
Reply to: Message 821 by Faith
06-10-2015 6:52 PM


Re: macroevolution not impossible -- it has been observed.
What sort of "genetic changes" are you talking about that occur "as they adapt to the different habitats"
Some of it is mutation, some of it is developmental effects on the maturation of the zygotes, and some of it is the random pairing of parental genes, one from column dad, one from column mom. Mutations include places where DNA strands are moved from one site to another or where some sections are omitted or where some sections are duplicated.
and what causes these genetic changes?
They are random, in part because replication is an imperfect process and in part because replication can be affected by environmental aspects (heat, chemical, hormonal).
How can adaptation "produce alleles?"
Adaptation is a two fold process the introduction of variation by mutation and selection of those variations that are better able to survive and reproduce:
Adaptation tends to be habitat\ecology specific (survival success) and mating specific (reproduction success). With runaway sexual selection (peacock) you can have remarkable adaptation with no change in habitat\ecology. We do see a degree of sexual selection in humans with mating preferences and race, but not enough to lead to mating isolation.
And how to the alleles "cause genetic isolation?
When selected alleles in one group (beneficial in it's habitat\ecology for survival and reproduction), happen to be incompatible with the selected alleles in the other population (beneficial in their habitat\ecology for survival and reproduction). Differences are not necessarily incompatible, but it can arise when there is no gene flow between the populations during the period of isolation.
And what "gets acquainted?"
Sorry, I meant reacquainted -- when the two populations that have been isolated happen to come back together, and in American natives and European explorers, or the two northern varieties of the Asian Greenish Warbler.
I'm interested in what happens at different population levels and degrees of genetic diversity. There are many levels and degrees between a fairly large daughter population that wouldn't lose a lot of diversity and a very small daughter population which would, and these could occur in a series, one splitting off from the former, all able to interbreed except the ones at the extremes that can happen in ring species. You aren't always getting speciation although you are always getting some degree of reduced genetic diversity as new subpopulations form their 9own unique traits. That's why I have subspecies in mind. Species by definition requires the cessation of interbreeding.
As in the Asian Greenish Warblers, a commonly used term is varietal or variety, as that implies differentiation between the populations but still being the same species. Race is also used, but to a lesser extent (perhaps because of negative connotations from racial discrimination).
But this is purely conceptual. If what I'm saying is true, that species may lack enough genetic diversity to continue to evolve then they can't "give rise to" any further populations as your chart assumes they do.
And in the absence of evidence to the contrary the assumption of continued genetic diversity and replenishment via mutation and selection is reasonable, especially as there IS evidence that this occurs.
Which is the argument everyone has, but as I keep trying to get across, even if you could get sufficient genetic diversity from mutations at a point of genetic depletion, (and if you could the cheetah would have been saved long ago but it's not happening) you'd just be getting scattered new traits within the population and not a new subspecies or species; ...
It's not a process that occurs all in one generation. As we see with the Cheetah the bottleneck was fairly recent (~12,000 years ago), the population that survived was small, the reproduction rate is low, cheetah populations are fairly isolated, meaning less opportunities for new mutations to occur and then work their way into the breeding population.
... the cheetah would have been saved long ago but it's not happening) ...
Or it just hasn't happened yet.
... you'd just be getting scattered new traits within the population and not a new subspecies or species; ...
And the next generation would have a scattering of more new traits, and the next generation would have a few more ... over time if these traits are beneficial to survival or reproduction or neutral to selection they will spread through the population. Thus the new traits build up over time, each generation building on the new traits from the last generation.
But if the species haven't the genetic ability to evolve further there is no more evolution.
It isn't an ability of the species Faith. Mutations occur randomly and there is no known process that prevents it. Mutations occur, and whether they are beneficial\neutral\deleterious depends on the habitat\ecology (survival) and on sexual compatibility (reproductively viable).
Again, you can't get macroevolution if genetic diversity has run out in the process of bringing about speciation.
And again, mutations occur randomly and there is no known process that prevents it. Mutations occur, and whether they are beneficial\neutral\deleterious depends on the habitat\ecology (survival) and on sexual compatibility (reproductively viable).
You can't get enough mutations for that when you've run out of genetic variability, and even if you could they produce scattered traits rather than a species, ...
If you can't get enough in one generation, then you look at two generation, three generations ... 50 generations ... 100 generations ... it is an accumulative process and not an all at once process.
... and to produce a species requires the processes that reduce genetic diversity.
Not necessarily. You can have two populations with the same genetic diversity becoming isolated in different habitats\ecologies. What happens during the accumulation of new traits and their selection in those habitats\ecologies is what determines whether they become different species or not. Sometimes yes, sometimes no.
Curiously, it's your concepts that have no relation to reality. It's all conceptual or hypothetical. You assume you can get evolution ...
Mutations and selection occur, they have been observed. Speciation occurs and it has been observed. That is not conceptual, it is fact. That IS evolution.
... when you have no genetic variability to make it possible, and you think you can build up variability with mutations which can't occur that reliably and in actual fact DON'T occur reliably, ...
Mutations are random, they are not "on demand" or occur for a purpose, but there is no limitation on mutations happening. That produces an endless supply of variations for selection to act on.
Neither does selection lead to any other purpose than the ability of individuals to survive and reproduce, there is no purpose to increase genetic variability or to produce new species, they are just occasional results of evolutionary processes.
... or again the cheetah and other endangered species would not be in danger. THAT's the reality, RAZD. Your clades and youir diagrams are at best hypothetical and most probably pure fiction.
That endangered species are in danger of going extinct does not mean that evolution does not occur. The natural history of organisms shows that over 99% of species go extinct. That is part of the selection process, occurring at the species level rather than the individual level. You can think of every breeding population as an "individual" species that evolves to increase it's ability to survive, and the "individual" species that are best at survival will supplant those that are less viable.
Evolution won't stop or the world come to an end if the cheetah and other endangered species perish and become extinct, rather there will be species that survive and there will be new species that develop from those living species, as has occurred throughout the natural history of life on earth.
Evolution does not exist to preserve species.
90% of what is offered as "reality" of evolution isn't reality at all, it's purely conceptual, and yet dissertations and websites and debate posts go on and on with these definitional sallies as if they did represent reality. Amazing really.
Because it doesn't do what you think it should do is no reason to think it is conceptual\fiction\etc, Faith, rather it is your narrow misunderstanding\expectations that are what fail.
Enjoy

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Message 867 of 1034 (759453)
06-11-2015 2:41 PM
Reply to: Message 859 by Faith
06-11-2015 11:59 AM


Re: macroevolution not impossible -- it has been observed.
Faith writes:
And if it hasn't, and acquired more genetic diversity after forming a species or subspecies, as I keep saying, that produces only scattered new traits, it still has to be subjected to the processes that reduce genetic diversity in order to arrive at a new species or subspecies.
Please respond to my Message 852.

--Percy
EvC Forum Director

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mikechell
Inactive Member


Message 868 of 1034 (759455)
06-11-2015 2:42 PM
Reply to: Message 855 by Admin
06-11-2015 11:27 AM


Re: macroevolution not impossible -- it has been observed.
mikechell writes:
Just as an example, use computer code: (from inet2000.com)
128-bit = 339,000,000,000,000,000,000,000,000,000,000,000 possible combinations (give or take a couple trillion...)
Thank you for the correction, although it was unnecessary. The number I posted was directly quoted off the site I was on ... I just deleted the math in between.
My point was that only 128 variables of on/off allow for almost unimaginable number of variations. The proportional increase of variations based on the gene and alleles numbers is virtually infinite. Even if each genetic change that led to a new species was permanent (which it isn't), there is infinitesimal diminishing of the possibility of future changes within the lifespan of planet Earth.
But you pointed out that your correction wasn't about the point I was trying to make. I just realized that ... but I am too lazy to erase what I typed in above.
Edited by mikechell, : lack of earlier observation.

evidence over faith ... observation over theory

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Stile
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Posts: 4295
From: Ontario, Canada
Joined: 12-02-2004


(3)
Message 869 of 1034 (759456)
06-11-2015 2:47 PM


Reductions and Increases
Does evolution require a reduction in genetic diversity? Yes. (Well, technically it's not required... but realistically-practically... it's going to happen).
Does evolution require an increase in genetic diversity? Yes. (Again, technically no... but without it, all things would die rather quickly).
The only question is: Which is greater? What is the net result?
Does evolution require a net reduction in genetic diversity? No.
Does it happen? Yes.
When it happens continuously, creatures die off. This has happened, does happen and will continue to happen many, many times.
Does evolution require a net increase in genetic diversity? No.
Does it happen? Yes.
When it happens continuously, creatures flourish. This has happened, does happen and will continue to happen many, many times.
The facts are that both these situations happen at different paces to different groupings of creatures all over the planet.
Some are lucky and flourish, others... not so much.
It should also be noted that any particular, specific increase or decrease in genetic diversity really says nothing about any overall net increase or decrease on the populations in question.
Edited by Admin, : Add emphasis around "net".

  
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Message 870 of 1034 (759458)
06-11-2015 2:58 PM
Reply to: Message 862 by Faith
06-11-2015 12:14 PM


Re: HBD:
Faith writes:
What would greatly help these days is being a lot less subjected to advice, rules and other comments.
I haven't been providing you "advice, rules and other comments."
I've been requesting clarification of some points, and I've been providing clarification of some points made by others. Yes, most of this is related to you, but I do the same with everyone, as I did with NoNukes earlier today, and with HBD earlier in the discussion.
In many messages people complain that they can't make sense of what you're saying, and you keep complaining that no one understands what you're saying, so I'm trying to help discussion along by asking you to provide clarification about some of your key points.
Also, you can't dismiss evidence because it is too complex to understand, then complain when someone else merely says it's complex because they know that if they describe the evidence you'll complain it's too complex. This makes no sense. Please work to understand the evidence. No one has ever judged a debate saying, "Because side A couldn't understand the evidence and arguments from side B, side A wins."
Edited by Admin, : Grammar.

--Percy
EvC Forum Director

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