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Author Topic:   Extent of Mutational Capability
Tangle
Member
Posts: 9510
From: UK
Joined: 10-07-2011
Member Rating: 4.8


(1)
Message 60 of 279 (793153)
10-22-2016 4:53 AM
Reply to: Message 54 by CRR
10-21-2016 8:51 PM


Re: What is a "kind"?
CRR writes:
Although some people may wish for a black-and-white criterion for defining species, this is unrealistic.
You'll find that no-one here has such a view. However, we also realise the taxonomy accurately defines the vast majority of life on this planet of ours. Species were defined long before our ability to sequence DNA which allows us to find relationships between organisms at a molecular level. DNA has shown that the taxonomic trees built over a few hundred years are surprisingly accurate. The plasticity of some organisms at the species level is an outcome of evolution itself and is entirely to be expected - the more closely related organisms are the more obvious it is that they may be able to cross-breed.
The definition I favour is "those animals/plants that could interbreed immediately following creation".
Which is totally useless as a definition for the obvious reason that you can't identify any such point in time, any such creation or any such organisms.
Our existing taxonomy has developed out of millions of direct observation and measurement. 'Kind' has no such foundation - its derivation is a children's story in a book written by a primitive culture.

Je suis Charlie. Je suis Ahmed. Je suis Juif. Je suis Parisien.
Life, don't talk to me about life - Marvin the Paranoid Android
"Science adjusts it's views based on what's observed.
Faith is the denial of observation so that Belief can be preserved."
- Tim Minchin, in his beat poem, Storm.

This message is a reply to:
 Message 54 by CRR, posted 10-21-2016 8:51 PM CRR has not replied

  
Tangle
Member
Posts: 9510
From: UK
Joined: 10-07-2011
Member Rating: 4.8


(2)
Message 74 of 279 (793196)
10-23-2016 5:36 PM
Reply to: Message 73 by CRR
10-23-2016 4:53 PM


Re: What is a "kind"?
CRR writes:
I have provided a definition of kind as per Percy's request [#45] and in response to others. The definition I favour is "those animals/plants that could interbreed immediately following creation". You might not agree with it but you now have one.
Why would you think that a personal definition with no factual corroboration would be of any use or interest to anyone but you?
It's not enough to shrug it off with 'this is what I believe', if you wish to make progress here you need to support your claim.

Je suis Charlie. Je suis Ahmed. Je suis Juif. Je suis Parisien.
Life, don't talk to me about life - Marvin the Paranoid Android
"Science adjusts it's views based on what's observed.
Faith is the denial of observation so that Belief can be preserved."
- Tim Minchin, in his beat poem, Storm.

This message is a reply to:
 Message 73 by CRR, posted 10-23-2016 4:53 PM CRR has not replied

  
Tangle
Member
Posts: 9510
From: UK
Joined: 10-07-2011
Member Rating: 4.8


Message 108 of 279 (793302)
10-25-2016 10:45 AM
Reply to: Message 104 by RAZD
10-25-2016 7:42 AM


Re: Clades
RAZD writes:
You can also throw Homo neanderthalus in the mix as sister species in clade Homo, closer to H.sapiens than the Pan clade.
This is where it gets messy, Neanderthals are now - along with at least 4 other human forms mostly classed as sub-species of Homo sapiens. They can't be species as they interbred. H. sapiens sapiens seems to be a bit of a mongrel. This has all changed since I formally studied it.

Je suis Charlie. Je suis Ahmed. Je suis Juif. Je suis Parisien.
Life, don't talk to me about life - Marvin the Paranoid Android
"Science adjusts it's views based on what's observed.
Faith is the denial of observation so that Belief can be preserved."
- Tim Minchin, in his beat poem, Storm.

This message is a reply to:
 Message 104 by RAZD, posted 10-25-2016 7:42 AM RAZD has replied

Replies to this message:
 Message 109 by RAZD, posted 10-25-2016 11:43 AM Tangle has replied
 Message 114 by Taq, posted 10-25-2016 3:16 PM Tangle has replied

  
Tangle
Member
Posts: 9510
From: UK
Joined: 10-07-2011
Member Rating: 4.8


Message 110 of 279 (793310)
10-25-2016 2:12 PM
Reply to: Message 109 by RAZD
10-25-2016 11:43 AM


Re: Clades
RAZD writes:
Where C is not the same as A, but is a braided mosaic of B and D. Note that A, B, C and D still form a clade descended from A.
Sort of but in the homo genus it seems that B, interbred with C,D, E and F. And C interbred with D & E but not F and so on depending who travelled where.
All 5 sub-species co-existed and as late as 40,000 years ago.
It makes you wonder whether all/most species whilst they're in the process of speciation meet up breed, move away, meet again etc etc and either finally separate for good like lions and tigers but can in principal interbreed or one outcompetes the others - as H. sapiens sapiens.
I feels a little like horizontal gene transfer. Life is messy.

Je suis Charlie. Je suis Ahmed. Je suis Juif. Je suis Parisien.
Life, don't talk to me about life - Marvin the Paranoid Android
"Science adjusts it's views based on what's observed.
Faith is the denial of observation so that Belief can be preserved."
- Tim Minchin, in his beat poem, Storm.

This message is a reply to:
 Message 109 by RAZD, posted 10-25-2016 11:43 AM RAZD has replied

Replies to this message:
 Message 113 by dwise1, posted 10-25-2016 2:52 PM Tangle has not replied
 Message 116 by RAZD, posted 10-25-2016 4:41 PM Tangle has not replied

  
Tangle
Member
Posts: 9510
From: UK
Joined: 10-07-2011
Member Rating: 4.8


Message 115 of 279 (793320)
10-25-2016 4:05 PM
Reply to: Message 114 by Taq
10-25-2016 3:16 PM


Re: Clades
Taq writes:
What we do have is genetically distinct populations that did occasionally interbreed.
I wonder how distinct?
"Neanderthal genetic differences to humans must therefore be interpreted within the context of human diversity."
Neanderthal genome project - Wikipedia
Our DNA is >99% the same as neanderthal but then again so are chimps....

Je suis Charlie. Je suis Ahmed. Je suis Juif. Je suis Parisien.
Life, don't talk to me about life - Marvin the Paranoid Android
"Science adjusts it's views based on what's observed.
Faith is the denial of observation so that Belief can be preserved."
- Tim Minchin, in his beat poem, Storm.

This message is a reply to:
 Message 114 by Taq, posted 10-25-2016 3:16 PM Taq has replied

Replies to this message:
 Message 117 by Taq, posted 10-25-2016 4:53 PM Tangle has replied

  
Tangle
Member
Posts: 9510
From: UK
Joined: 10-07-2011
Member Rating: 4.8


Message 119 of 279 (793338)
10-26-2016 6:19 AM
Reply to: Message 117 by Taq
10-25-2016 4:53 PM


Re: Clades
Taq writes:
The best answer, IMHO, is that they were separate species.
But at that level, the term 'species' doesn't really mean much. A great dane and a shitzu could reasonably be called morphologically different species and I doubt they could breed naturally...... but we have them as the same species.
Sapiens and Neanderthal's lived together and sucessfully mated - for thousands of years. It looks like Neadethals could speak - they certainly used tools, drew art, had clothing and ornaments. I suspect if they were living with us now, we'd call them human - in the general usage of that word and science might not even classify them as a subspecies. But who knows, it's all pretty interesting though.

Je suis Charlie. Je suis Ahmed. Je suis Juif. Je suis Parisien.
"Life, don't talk to me about life" - Marvin the Paranoid Android
"Science adjusts it's views based on what's observed.
Faith is the denial of observation so that Belief can be preserved."
- Tim Minchin, in his beat poem, Storm.

This message is a reply to:
 Message 117 by Taq, posted 10-25-2016 4:53 PM Taq has replied

Replies to this message:
 Message 120 by Taq, posted 10-26-2016 10:46 AM Tangle has replied

  
Tangle
Member
Posts: 9510
From: UK
Joined: 10-07-2011
Member Rating: 4.8


Message 121 of 279 (793352)
10-26-2016 11:17 AM
Reply to: Message 120 by Taq
10-26-2016 10:46 AM


Re: Clades
Taq writes:
Of course it still means something. It means that limited interbreeding is producing statistically significant genetic divergence which can be objectively measured.
I'm not at all convinced. You say 'limited interbreeding', it's not at all clear that that was the case, and in anycase what does it mean? Was it the case that passing H.s tribes raped and pillaged H.n - and vice versa - or did they live together? If the latter, then what does it mean? We are almost a close genetically to chimps as H.n but we can't imagine H.s living and mating with them. Were they actually that different and over what timescale? Are they more different than I am from say an Australian aboriginal?
1. If there was free interbreeding then they would fall into the range of variation for modern humans. They don't.
It seems that there was interbreeding - I don't know what 'free' interbreeding is. Small groups might freely interbreed, others might never meet.
2. They were recognized as not being anatomically modern humans when we first found them. Time isn't going to change that.
They were identified from pieces of bone. The DNA tells us more and so does archaeology. Science now classifies them as a subspecies rather than a seperate species. I think the truth is somewhere in between and I find the whole idea fascinating as it's so recent.
Edited by Tangle, : Spelling....

Je suis Charlie. Je suis Ahmed. Je suis Juif. Je suis Parisien.
"Life, don't talk to me about life" - Marvin the Paranoid Android
"Science adjusts it's views based on what's observed.
Faith is the denial of observation so that Belief can be preserved."
- Tim Minchin, in his beat poem, Storm.

This message is a reply to:
 Message 120 by Taq, posted 10-26-2016 10:46 AM Taq has replied

Replies to this message:
 Message 122 by New Cat's Eye, posted 10-26-2016 12:25 PM Tangle has not replied
 Message 144 by Taq, posted 10-31-2016 5:01 PM Tangle has not replied

  
Tangle
Member
Posts: 9510
From: UK
Joined: 10-07-2011
Member Rating: 4.8


(1)
Message 124 of 279 (793357)
10-26-2016 12:56 PM
Reply to: Message 123 by RAZD
10-26-2016 12:38 PM


Re: four interwoven species?
Well I was making some notes from a TV programme I coincidentally watched last week - might as well drop them in here now....
Modern humans co-existed with at least 4 other human species. We interbred with them and our DNA shows that there were more human species than we currently have fossil evidence for.
Neanderthals have been found in caves in Gibraltar only 32,000 ago. They weren't the near apes we thought they were; they had culture, they planned, had abstract thought (art), clothing and tools. They buried their dead, made jewellery and body ornaments. Neanderthals and modern humans competed for the same resource and interbred.
Our modern human genomes contain neanderthal DNA. Everyone of non-African descent carries neanderthal DNA - around 2-3%. At least half the neanderthal genome still exists in modern humans.
Siberian finds show a third kind of human living with both modern humans and neanderthals. We have a complete genome from a 50,000 year old bone. A new extinct human form, the Denisovans. We have about 60-70% of Denisovan DNA. The archaic DNA is active in our immune system; Denisovans contributed genes that allow people to survive at altitude - Tibetan's now rely on it.
Homo fluorientis - 'the hobbit people' - also lived at the same time as modern humans, neanderthals and the Denisovans. They had Island dwarfism and tiny brains. We don't know whether they inter-bred but it seems unlikely.
DNA from a modern African tribe show that there is yet another human species - so far unidentified by fossil evidence - that also co-existed with modern humans, Neanderthals and Denisovans.
So about 30,000 years ago there were at least 4 other human species co-existing and interbreeding with modern humans but after that only us were left. It's probably only a matter of luck H. sapiens sapiens survived.
(Interesting question for the believers, were those other now extinct humans saved?)

Je suis Charlie. Je suis Ahmed. Je suis Juif. Je suis Parisien.
"Life, don't talk to me about life" - Marvin the Paranoid Android
"Science adjusts it's views based on what's observed.
Faith is the denial of observation so that Belief can be preserved."
- Tim Minchin, in his beat poem, Storm.

This message is a reply to:
 Message 123 by RAZD, posted 10-26-2016 12:38 PM RAZD has replied

Replies to this message:
 Message 126 by RAZD, posted 10-26-2016 2:36 PM Tangle has not replied

  
Tangle
Member
Posts: 9510
From: UK
Joined: 10-07-2011
Member Rating: 4.8


Message 179 of 279 (793653)
11-03-2016 3:43 AM
Reply to: Message 171 by CRR
11-02-2016 7:57 PM


Re: The Maths
CRR writes:
It's known as Haldane's Dilemma. A clear exposition is given in http://saintpaulscience.com/CostTheory1.pdf
You can't come here with 60 year old refuted claims and hope to blunder your way through. Please take particular note of the sentence I've highlighted in bold. Only creation 'scientists' continue to use 'facts' that have been shown to be wrong with better evidence.
Why do they do that do you think?
Claim CB121:
J. B. S. Haldane calculated that new genes become fixed only after 300 generations due to the cost of natural selection (Haldane 1957). Since humans and apes differ in 4.8 107 genes, there has not been enough time for difference to accumulate. Only 1,667 nucleotide substitutions in genes could have occurred if their divergence was ten million years ago.
Source:
ReMine, Walter J., 1993. The Biotic Message, St. Paul Science, Inc.
Response:
Haldane's "cost of natural selection" stemmed from an invalid simplifying assumption in his calculations. He divided by a fitness constant in a way that invalidated his assumption of constant population size, and his cost of selection is an artifact of the changed population size. He also assumed that two mutations would take twice as long to reach fixation as one, but because of sexual recombination, the two can be selected simultaneously and both reach fixation sooner. With corrected calculations, the cost disappears (Wallace 1991; Williams n.d.).
Haldane's paper was published in 1957, and Haldane himself said, "I am quite aware that my conclusions will probably need drastic revision" (Haldane 1957, 523). It is irresponsible not to consider the revision that has occurred in the forty years since his paper was published.
ReMine (1993), who promotes the claim, makes several invalid assumptions. His model is contradicted by the following:
The vast majority of differences would probably be due to genetic drift, not selection.
Many genes would have been linked with genes that are selected and thus would have hitchhiked with them to fixation.
Many mutations, such as those due to unequal crossing over, affect more than one codon.
Human and ape genes both would be diverging from the common ancestor, doubling the difference.
ReMine's computer simulation supposedly showing the negative influence of Haldane's dilemma assumed a population size of only six (Musgrave 1999).
Links:
Williams, Robert, n.d. Haldane's dilemma. http://www.gate.net/~rwms/haldane1.html
References:
Haldane, J. B. S., 1957. The cost of natural selection. Journal of Genetics 55: 511-524.
Musgrave, Ian, 1999. Weasels, ReMine, and Haldane's dilemma. The Talk.Origins Archive Post of the Month: September 1999
ReMine, Walter J., 1993. The Biotic Message, St. Paul Science, Inc.
Wallace, Bruce, 1991. Fifty Years of Genetic Load - An Odyssey. Cornell University Press. See particularly Chapters 5, 6, 8, and 9.
Williams. (See above)
CB121: Haldane's Dilemma

Je suis Charlie. Je suis Ahmed. Je suis Juif. Je suis Parisien.
"Life, don't talk to me about life" - Marvin the Paranoid Android
"Science adjusts it's views based on what's observed.
Faith is the denial of observation so that Belief can be preserved."
- Tim Minchin, in his beat poem, Storm.

This message is a reply to:
 Message 171 by CRR, posted 11-02-2016 7:57 PM CRR has not replied

Replies to this message:
 Message 187 by dwise1, posted 11-03-2016 10:26 AM Tangle has not replied

  
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