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Author Topic:   Some mutations sound too good to be true
Faith 
Suspended Member (Idle past 1469 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 31 of 301 (245064)
09-19-2005 11:49 PM
Reply to: Message 4 by Wounded King
09-19-2005 11:23 AM


This is a fascinating post though I think it's over my head so I'll have to get you to explain some things if I can find the right questions. While I want to think about everybody's input here, I have a feeling yours is going to be the most fruitful if I can get a grasp of it.
Since this resistance develops rather predictably, however, this still suggests to my mind a built-in process of some sort -- or even something frankly Lamarckian in nature. Mutation, which I've understood to be basically an anomaly in the process, random and unpredictable, and often lethal, hardly seems a reliable method for developing any kind of survival-enhancing capacities in anything.
Plaease bear in mind that this resistance is highly variable, there are a number of different genetic solutions for resistance to even one type of antibiotic.
By "genetic solutions" you mean genetic changes of one sort or another that lead to such resistance? So you have different sources of resistance in different kinds of genetic effects? And maybe even different kinds or degrees of resistance?
Mutation is arguably an anomaly in the process of DNA replication, but it is a persistent one.
In fact in its many discrete forms it is the most significant method for the introduction of genetic novelty, which is the absoloute pre-requisite for devoloping any new kind of capacity whatever.
See, already this is a different idea of mutation than I've had, that it is persistent and even only "arguably" an anomaly -- rather than a random completely haphazard occurrence. This makes it something closer to what I figured had to be going on, to something built in, a normal predictable process of genetic behavior. This is what I'd like to get a better understanding of if I can.
It also appears to be a different view than what some others are saying here, although maybe this is a misreading and you can reconcile the various views.
Mutation is 'inbuilt' in the process of DNA replication, due to DNA replicating systems not being 100% perfect. A simple 100% perfect replicating system would be very efficien at multiplying itself but would never have any capacity for novelty or developmentd.
Wouldn't that depend on how many possible combinations of factors are inbuilt in the coding system to begin with? Doesn't it also depend on just how many of these mutations enhance the genetic makeup of the organism rather than causing genetic diseases? Also, even if they don't have effects on the phenotype, doesn't the fact that something in the DNA has been changed suggest that all is not well with the organism at that level? I mean aren't we talking about a sequence that produced a particular protein no longer producing it? How can that be a good thing for the overall functioning of the organism in the long run?
I'm not sure if anyone else pointed this out but inheritance in Bacteria can quite easily be thought of as Lamarckian. 'Characteristics' can be acquired by lateral gene transfer allowing for a much quicker spread of a beneficial gene contained on a plasmid through a bacterial population than for a beneficial gene through a sexually reproducing population such as humans. Any mutation occuring through misrepair rather than an error during mitosis is arguably an acquired characteristic and will be inherited by any descendants of that bacterium.
I did see some discussion of plasmids on the other thread but I barely grasp the concept.
You seem to be saying that misrepair is nearly a "normal" process.
But how often does it produce something beneficial? Or something that emerges as a trait, and how often is that trait of benefit to the organism or even just neutral as opposed to negative or deleterious? I understand that "trait" is getting to a completely different level of biology though, and that a single mutation may not produce any observable change. These questions are klutzy I think, but maybe they'll get sharper eventually.
When there is no distinction between somatic and germ line lineages Lamarckian phenomena become quite acceptable.
I need some unpacking of this if I am to understand it. Thanks.

This message is a reply to:
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Replies to this message:
 Message 47 by Annafan, posted 09-20-2005 6:47 AM Faith has replied

TheLiteralist
Inactive Member


Message 32 of 301 (245067)
09-20-2005 12:09 AM
Reply to: Message 26 by Faith
09-19-2005 10:31 PM


stricter guidelines
Hi Faith,
This raises questions about exactly WHAT mutation IS. It's beginning to sound like there is a kind of "mutation" that really IS a normal built-in process, but that the mechanism for this is not yet understood.
My two or three posts have been an attempt to show you that I have the same idea that mutations are a "normal built-in process." The threads I linked you to go into more detail.
Message 21 is pretty representative of how I post at EvC. I didn't assert that any of my beliefs were supported by scientific evidence. And I am not usually reprimanded for my posts.
I was trying to let people know that they can examine my personal ideas about DNA mutations without worrying about upsetting my faith in the Bible because my ideas about DNA mutations are NOT the Bible (the Bible doesn't explain DNA processes). Also, by stating my beliefs (regarding the fall/Flood), it gives insight into my musings.
However, your concern may be valid since AdminBen did specify stricter rules for this thread -- that is, science and only science.
Instead of editing my post, I invite AdminBen to feel free to let me know (by posting in this thread or by any other means) if he is uncomfortable with Message 21 in any way per the guidelines for this thread. If he is, then, in the future, I will try to be more careful in this thread.
I have always considered EvC to be Percy's playground, and, as such, have decided that I will either play by his rules or not play at all. I would expect no less from people participating in a forum I was running (were I to run a forum).
--Jason

This message is a reply to:
 Message 26 by Faith, posted 09-19-2005 10:31 PM Faith has replied

Replies to this message:
 Message 34 by Faith, posted 09-20-2005 12:14 AM TheLiteralist has not replied

coffee_addict
Member (Idle past 502 days)
Posts: 3645
From: Indianapolis, IN
Joined: 03-29-2004


Message 33 of 301 (245068)
09-20-2005 12:13 AM
Reply to: Message 21 by TheLiteralist
09-19-2005 9:34 PM


Re: on-purpose mutations vs. not-on-purpose mutations
TL writes:
I'm no expert on anything. I believe the Bible. I've got a little "theory." If the theory is wrong, I'll still believe the Bible....
Not to pull out my imaginary admin mode on you, but to quote a great nadkicker of this forum:
AB writes:
To those who choose to participate on this thread (including Faith): stay focused on the data and on the science. I will keep all posters to a higher standard than usual. I will be watching this thread closely, and will have a "quick hook" on removing posting priveleges to this thread for those who fail to contribute appropriately.
If you feel that there is an impenetrable shield protecting you from science, why even bother participating in this thread?
Your statement there have a bigger impact on those of us that are dedicating our lives to science than you think. Basically, you are asking us to commit our time to explaining things to you and then say, "oops, I forgot to tell you that everything you say will go in one of my ears and go out the other."
I think it is better for you to stick with the theology and religious forums from now on.

This message is a reply to:
 Message 21 by TheLiteralist, posted 09-19-2005 9:34 PM TheLiteralist has not replied

Faith 
Suspended Member (Idle past 1469 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 34 of 301 (245069)
09-20-2005 12:14 AM
Reply to: Message 32 by TheLiteralist
09-20-2005 12:09 AM


Re: stricter guidelines
OK. As usual there is so much happening on the thread that knowing where to start is a problem, so I was saving your links until after I thought through some of the other posts. But that may have been the wrong starting point.
I got the impression from Ben that even MENTIONING the Bible on this side of the forum was off limits, but yes, whatever they have to say about it is the rule.

This message is a reply to:
 Message 32 by TheLiteralist, posted 09-20-2005 12:09 AM TheLiteralist has not replied

coffee_addict
Member (Idle past 502 days)
Posts: 3645
From: Indianapolis, IN
Joined: 03-29-2004


Message 35 of 301 (245072)
09-20-2005 12:24 AM
Reply to: Message 26 by Faith
09-19-2005 10:31 PM


Re: on-purpose mutations vs. not-on-purpose mutations
Faith writes:
...just give your theory and anything factual that you think supports it?
Not meaning to pull out my nitpicking stick on you, but I think this is where it is appropriate for me to point out something that, although may seem minor to non-science people, is of great importance to the rest of us.
The word theory, in science, is only strictly used for an idea or explanation that have to have at least a certain level of certainty. In the case of TL's idea, it is a hypothesis and shalt remain as such for a very long time, at least until it has gained the support of much compiling evidence.
I think part of the problem between the evo vs creo debate is that creo's just don't/won't understand how hard it is for something to become a theory. To give you a frame of reference, it is harder for something to become a theory than for me to cut off my arm. We don't and shouldn't use the word so liberally.

This message is a reply to:
 Message 26 by Faith, posted 09-19-2005 10:31 PM Faith has not replied

Replies to this message:
 Message 37 by TheLiteralist, posted 09-20-2005 12:39 AM coffee_addict has not replied

coffee_addict
Member (Idle past 502 days)
Posts: 3645
From: Indianapolis, IN
Joined: 03-29-2004


Message 36 of 301 (245073)
09-20-2005 12:31 AM
Reply to: Message 29 by deerbreh
09-19-2005 10:54 PM


Re: ... and some mutations are just good enough.
deerbreh writes:
And understand that bacterial populations multiply much faster than people can possibly buy lottery tickets so many more "chances" occur. It is a good analogy.
A bacterial generation can be as short as a few seconds and the rate of increase in population is exponential. If anything, I find it amazing that after a few nights worth of growth that there are so few individuals who have gained the mutation to resist anti-biotics, considering just how many mitotic processes the culture goes through in just a few hours.

This message is a reply to:
 Message 29 by deerbreh, posted 09-19-2005 10:54 PM deerbreh has not replied

Replies to this message:
 Message 39 by Wounded King, posted 09-20-2005 2:22 AM coffee_addict has replied

TheLiteralist
Inactive Member


Message 37 of 301 (245074)
09-20-2005 12:39 AM
Reply to: Message 35 by coffee_addict
09-20-2005 12:24 AM


hypothesis v. theory
Lam,
The word theory, in science, is only strictly used for an idea or explanation that have to have at least a certain level of certainty. In the case of TL's idea, it is a hypothesis and shalt remain as such for a very long time, at least until it has gained the support of much compiling evidence.
Hypothesis! That's the word.
Thanks.

This message is a reply to:
 Message 35 by coffee_addict, posted 09-20-2005 12:24 AM coffee_addict has not replied

AdminBen
Inactive Member


Message 38 of 301 (245076)
09-20-2005 1:22 AM
Reply to: Message 21 by TheLiteralist
09-19-2005 9:34 PM


Re: on-purpose mutations vs. not-on-purpose mutations
Hi Jason,
I'm glad to see Faith is on top of this one. This thread is all about examining scientific facts of how mutations occur, how often they occur, and thinking about if, scientifically speaking, it should be "surprising" that such mutations lead to beneficial changes. Your pet hypothesis is game for another thread / another time. For here, it's off topic.
Faith is also right about mentioning faith in this thread. The view here is that doesn't care about faith. It cares only about empirical observations and trying to explain them / model them. As such, there's no need to mention faith here. Those with and without faith can do science, and mentioning faith can only distract from the empirical issues we're trying to focus on here.
Please keep this in mind when posting on this thread. It's a good rule of thumb for posting on all science threads.
If you need further clarification, please follow the "General discussion..." link below and post to that thread. In the meantime, I really need you to stick to "science-only" very strictly. It took a fair amount of work even to get this thread started, so I'm very wary of it being pulled off of the main point--to ask questions and examine a scientific theory.
Thanks.
AbE: Changing "theory" to "hypothesis"
Also, thanks to everybody for really thinking about staying right on topic. Glad to see the effort of all posting in this thread. Keep it up!
This message has been edited by AdminBen, Monday, 2005/09/19 10:32 PM

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This message is a reply to:
 Message 21 by TheLiteralist, posted 09-19-2005 9:34 PM TheLiteralist has replied

Replies to this message:
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Wounded King
Member
Posts: 4149
From: Cincinnati, Ohio, USA
Joined: 04-09-2003


Message 39 of 301 (245078)
09-20-2005 2:22 AM
Reply to: Message 36 by coffee_addict
09-20-2005 12:31 AM


Re: ... and some mutations are just good enough.
A bacterial generation can be as short as a few seconds
Really? What bacterium is that for?
TTFN,
WK

This message is a reply to:
 Message 36 by coffee_addict, posted 09-20-2005 12:31 AM coffee_addict has replied

Replies to this message:
 Message 42 by coffee_addict, posted 09-20-2005 5:03 AM Wounded King has not replied

Parasomnium
Member
Posts: 2224
Joined: 07-15-2003


Message 40 of 301 (245080)
09-20-2005 2:55 AM
Reply to: Message 11 by Faith
09-19-2005 4:45 PM


Re: ... and some mutations are just good enough.
Faith,
Since you answered my post this thread has grown rapidly. A lot has been explained already, so I'll just pick some points from your reply to me and comment on them.
First this. You said:
The problem is with the "random" in "random mutation."
A bit further on in the thread, Wounded King explained random mutation to you, to which you replied with:
this is a different idea of mutation than I've had, that it is persistent and even only "arguably" an anomaly -- rather than a random completely haphazard occurrence. This makes it something closer to what I figured had to be going on, to something built in, a normal predictable process of genetic behavior. This is what I'd like to get a better understanding of if I can.
Well, I hope the following will further help your understanding. Random mutation is "normal" and predictable in the same sense that traffic accidents are. We know that traffic accidents happen, they're a fact of life, and insurance companies use statistical predictions to calculate risks. Likewise, random mutation is a fact of life, because the copying process just isn't perfect. In that sense, you might say mutation is a built-in aspect of the genetic process, but only in that sense. The randomness lies in the fact that it is uncertain which particular mutations will happen. But that some of the copied DNA will have mutations is a near certainty, just as it's a near certainty that some traffic accidents will happen.
So, yes, mutation is a "random completely haphazard occurrence", but it's also a "normal predictable process of genetic behavior". Sometimes, you can have both.
Next, a quick word about the lottery analogy. I said
quote:
Buying a lottery ticket isn't a sure fire way of acquiring a lot of money, but some people do win the lottery.
How about if I rephrase that in terms of mutation? "Having a mutation isn't a surefire way of acquiring resistance to antibiotics, but some bacteria do acquire resistance." Does that clear up the analogy?
Finally, some praise is in order.
Faith writes:
If possible, if it's not beyond me, I'd like to learn from this thread more about the actual science that this involves
Judging by how you handle things in this thread, I'd say it's certainly not beyond you. You are doing great so far, keep it up. And I think your assessment of Wounded King's input is right on the mark. I think he's one of the more knowledgeable people here, where the scientific details behind evolution are concerned. And he always seems willing to oblige, provided you treat him well, so keep him an eye on him.
This message has been edited by Parasomnium, 20-Sep-2005 08:51 AM

We are all atheists about most of the gods that humanity has ever believed in. Some of us just go one god further. - Richard Dawkins

This message is a reply to:
 Message 11 by Faith, posted 09-19-2005 4:45 PM Faith has not replied

Nuggin
Member (Idle past 2518 days)
Posts: 2965
From: Los Angeles, CA USA
Joined: 08-09-2005


Message 41 of 301 (245082)
09-20-2005 3:22 AM
Reply to: Message 11 by Faith
09-19-2005 4:45 PM


Re: ... and some mutations are just good enough.
No matter how many billions of chances are involved, it is hard to understand how there could even be ONE beneficial purely random mutation in the lot -- let alone the fact that this beneficial change is encountered in population after population after population of bacteria exposed to antibiotics.
Here's where I think you are getting caught up. I think you are thinking of the mutations as being a single on off principle. (ie The bacteria either IS or ISN'T resistant.)
Here's an experiment. (fair warning it's late and this may not make as much sense as it seems to right now).
Take random single bacteria X. It has a degree of resistance to Antibotic 1. In this case, it's very little resistance. Just like you have very little resistance to cyanide poisoning. If the dose is small enough, you will survive. Same here.
Allow bacteria X to reproduce a billion times. Some of these billion "offspring" will be slightly more resistant, slightly less resistant, exactly the same, very resistant or not resistant.
Going statistically, the largest group should be "exactly the same" with the slightly one way or another coming in second and the very one way or another not represented.
Now we have two different possibilities. We hit this group with Antibotic 1 in massive doses over an extended period of time. High concentration. OR We hit is with a more mild, but still lethal dose of antibotic. Low concentration.
If we hit it with high concentration, all the no resistant, low resistant and normal resistant versions will die off right away. If we keep up the concentration, the slightly resistants and very resistants will likely die as well. Leaving us with nothing. Only the extremely rare Completely Resistant strain would be left, and chances are slim that we'd have one in our one batch.
However, if we hit it with a low concentration (the real life equivelent of someone who takes half their prescription, feels better and stops taking the pills) we'd expect that the no resistant and low resistants would die. Maybe the normals live, maybe the die. They slightly and very resistants thrive.
The extremely rare beneficial mutation of complete immunity doesn't need to have taken place if the doses are not one hundred percent lethal.
This is the process by which we are raising all sorts of very resistant stains.

This message is a reply to:
 Message 11 by Faith, posted 09-19-2005 4:45 PM Faith has not replied

Replies to this message:
 Message 44 by TheLiteralist, posted 09-20-2005 5:30 AM Nuggin has not replied
 Message 45 by TheLiteralist, posted 09-20-2005 5:51 AM Nuggin has replied

coffee_addict
Member (Idle past 502 days)
Posts: 3645
From: Indianapolis, IN
Joined: 03-29-2004


Message 42 of 301 (245085)
09-20-2005 5:03 AM
Reply to: Message 39 by Wounded King
09-20-2005 2:22 AM


Re: ... and some mutations are just good enough.
I was referring to a single cell dividing into two daughter cells and then those daughter cells dividing yet into more daughter cells. I could be wrong, but each one of those is a generation.

This message is a reply to:
 Message 39 by Wounded King, posted 09-20-2005 2:22 AM Wounded King has not replied

Replies to this message:
 Message 46 by wj, posted 09-20-2005 6:30 AM coffee_addict has replied

TheLiteralist
Inactive Member


Message 43 of 301 (245087)
09-20-2005 5:09 AM
Reply to: Message 38 by AdminBen
09-20-2005 1:22 AM


Re: on-purpose mutations vs. not-on-purpose mutations
AdminBen writes:
In the meantime, I really need you to stick to "science-only" very strictly.
Okay.

This message is a reply to:
 Message 38 by AdminBen, posted 09-20-2005 1:22 AM AdminBen has not replied

TheLiteralist
Inactive Member


Message 44 of 301 (245090)
09-20-2005 5:30 AM
Reply to: Message 41 by Nuggin
09-20-2005 3:22 AM


no step-by-step required
content deleted. I completely misunderstood Nuggin. I thought I was seriously disagreeing with his post, but I wasn't.
--Jason
This message has been edited by TheLiteralist, 09-20-2005 05:35 AM
This message has been edited by TheLiteralist, 09-20-2005 05:36 AM
This message has been edited by TheLiteralist, 09-20-2005 05:38 AM

This message is a reply to:
 Message 41 by Nuggin, posted 09-20-2005 3:22 AM Nuggin has not replied

TheLiteralist
Inactive Member


Message 45 of 301 (245092)
09-20-2005 5:51 AM
Reply to: Message 41 by Nuggin
09-20-2005 3:22 AM


Re: ... and some mutations are just good enough.
Nuggin,
Going statistically, the largest group should be "exactly the same"
Actually, I was under the impression that no two cells are ever "exactly the same," due to the copying "errors."

This message is a reply to:
 Message 41 by Nuggin, posted 09-20-2005 3:22 AM Nuggin has replied

Replies to this message:
 Message 50 by Jazzns, posted 09-20-2005 9:54 AM TheLiteralist has replied
 Message 51 by Cal, posted 09-20-2005 10:35 AM TheLiteralist has not replied
 Message 102 by Nuggin, posted 09-21-2005 1:41 AM TheLiteralist has not replied

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