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Author Topic:   Hello, cousin! (re: Recent common ancestors to all living humans)
nwr
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Posts: 6412
From: Geneva, Illinois
Joined: 08-08-2005
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Message 8 of 76 (328888)
07-05-2006 7:22 AM
Reply to: Message 7 by Larni
07-05-2006 6:01 AM


No bottleneck
You might have misunderstood this. It is not suggesting a bottleneck at 5-7k (or anywhere). It is saying that, at 5-7k ago, I had many many many great great great .... grandmothers, so many that the chances are that you too are descended from at least one of them. No bottleneck is required.
I share Jazzns skepticism with regard to relatively isolated populations such as the Australian aboriginals. But it could still be correct if there was a small amount of gene flow between them and pacific islanders.

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nwr
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Posts: 6412
From: Geneva, Illinois
Joined: 08-08-2005
Member Rating: 4.5


Message 24 of 76 (329750)
07-08-2006 1:12 AM
Reply to: Message 21 by RAZD
07-08-2006 12:16 AM


Re: It just doesn't add up pink.
Page not found | Creation Safaris
Not too bad a take on their part (aside from the rather obvious inferences).
One of us is confused. What you quote from that site seems to me to be based on a gross misunderstanding of the paper.
The authors are not claiming that humankind popped into existence a few thousand years ago, but only that everyone alive today had the same ancestors.
No, that is not being claimed at all. What is claimed is that there was at least one common ancester.
One question he asks is, "In the idealized models, how far back would one have to go to find a single couple who are the lone ancestors of everybody?" to which we might add, "and did their names start with A and E?"
Not having the paper in front of me, I cannot tell if that question was asked. However, it is clear that the study could not throw any light whatsoever on that particular question.
We have evidence from genetics where they in fact LOOKED for a common ancestor in female mtDNA and male yDNA and the results were on the order of 160,000 to 200,000 years.
I'm not sure of the relevance of this. There could be an MRCA from 7000 years ago, yet it might be that none of my genes are inherited via that chain. My DNA might all (apart from recent mutations) come from the many other ancestors I happened to have at that same era.
Edited by nwr, : fix typo (MRCA, not MCRA)

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nwr
Member
Posts: 6412
From: Geneva, Illinois
Joined: 08-08-2005
Member Rating: 4.5


Message 27 of 76 (329836)
07-08-2006 11:03 AM
Reply to: Message 25 by RAZD
07-08-2006 10:17 AM


From one of the "abstracts"
... and going back a few thousand more years (to about 7,000 years ago) we would get to the IA point where each present-day human has exactly the same set of ancestors.
At least that makes it clear that you have to go back a few thousand years earlier than the MRCA to find a time where all had the same ancestors. The text I commented on omitted that detail of having to look further back.
One, btw, more credible than the MCRA conclusion.
I'm not sure why you are having problems with the MRCA conclusion. If there were common ancestors at one time, then there was a most recent common ancestor.
There could be an MRCA from 7000 years ago, yet it might be that none of my genes are inherited via that chain.
I'm pretty sure that contradicts the concept of "Most Recent Common Ancestor"
From an ancestor at, say, 200 generations ago, I could expect to inherit around 2-200 of my genes. That is far less than 1 gene. Where do you see a contradiction?
Some of my ancestors from 200 generations ago likely appear multiple times in my ancestral tree. That would increase the expected amount of DNA I would inherit from them. However, the MRCA probably appears relatively few times in my ancestral tree.

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nwr
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Posts: 6412
From: Geneva, Illinois
Joined: 08-08-2005
Member Rating: 4.5


Message 32 of 76 (329862)
07-08-2006 12:26 PM
Reply to: Message 30 by RAZD
07-08-2006 11:58 AM


How do you know that all the "MRCA" genes come from one person?
The term "MRCA genes" seems confused. As the subtitle of Message 29 says, this has to do with genealogy rather than genetics.
The claim the authors make in the paper we are discussing, is actually a very weak claim (though still counter-intuitive). You are mostly arguing against something stronger which is not being what is being claimed. Or, at least it is not what the original authors are claiming - maybe it is what some creationists are claiming.

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nwr
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Posts: 6412
From: Geneva, Illinois
Joined: 08-08-2005
Member Rating: 4.5


Message 35 of 76 (329869)
07-08-2006 1:07 PM
Reply to: Message 34 by RAZD
07-08-2006 12:41 PM


Indeed, there is a lot of confusion there.

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nwr
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Posts: 6412
From: Geneva, Illinois
Joined: 08-08-2005
Member Rating: 4.5


Message 37 of 76 (329956)
07-08-2006 9:09 PM
Reply to: Message 36 by RAZD
07-08-2006 8:39 PM


Re: Got the paper, but ...
First off lets take the age of that "MRCA along exclusively maternal lines" and see what we get:
2004 (time of article) - 1400 AD = 600 years in round numbers.
600 x 50,000 = 30,000,000 ... 30 million years ago?
That's several times the age of the earliest hominids to say nothing of the age of Homo sapiens (~160,000 years), so there is obviously something wrong with this calculation.
It's not all that obvious that it is wrong. It seems possible that the earliest common ancestor along female lines need not be a hominid. (Or don't you believe in evolution?)
In the male part of the population the MRCA can be either male or female.
If male, then the MRCA cannot be younger than the exclusively patrilineal line MRCA.
Would you care to explain that one? It seems obviously wrong.
Maybe somebody raped your mother. And maybe the same person raped my mother. In that case, the two of us could have a male MRCA (namely, that rapist) only two generations back. But to find a common patrilineal MRCA would likely take many more generations. The rapist wouldn't count, since the line of descent went through our mothers so was not patrilineal.

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nwr
Member
Posts: 6412
From: Geneva, Illinois
Joined: 08-08-2005
Member Rating: 4.5


Message 38 of 76 (329969)
07-08-2006 9:39 PM
Reply to: Message 37 by nwr
07-08-2006 9:09 PM


Re: Got the paper, but ...
Oops, I got that counter example (last paragraph) wrong. For it to work, he has to have raped both of our maternal grandmothers.

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nwr
Member
Posts: 6412
From: Geneva, Illinois
Joined: 08-08-2005
Member Rating: 4.5


Message 40 of 76 (330058)
07-09-2006 10:24 AM
Reply to: Message 39 by RAZD
07-09-2006 1:00 AM


Re: How many generations?
Sorry, to clarify: in comparison to the mtDNA "MRCA" (150,000 years ago) it is obviously wrong.
I wondered if that was your concern.
I haven't actually read the paper. I'm trying to manage on what I have read. Maybe I will have to read it, though I think it is unimportant enough to not warrant the time. I assume that the calculation of time to matrilineal MRCA is a crude back-of-the-envelope one, making lots of assumptions. Moreover, the mathematical notation x ~ y usually denotes asymptotic similarity where one ignores a multiplicative constant (could be a large constant). So it doesn't trouble me at all that a rough computation doesn't precisely coincide with what is observed.
Now, getting to your example with 10 couples.
Every child in the final circle (#10) is now related to each of the original couples at the same time and to the same degree -- who was the "MRCA" in this setup?
The original 10 couples (20 people) are all MRCAs. There is no requirement that there be a unique MRCA.
Notice that this occurs at (n/2) generations, and that there is no MRCA Tn at log2n = 2.3 generations as the model used projects.
Actually, no, on my reading (actually non-reading) it does not project that. The log2n is an asymptotic figure - what is approached for large n. You can't expect it to apply to small n. Moreover, the asymptotic prediction is presumably based on random mating, not the constrained mating of your example.
Using those mutations and the (current) rate of change to then project a genetic MRCA is obviously (to me) rather bogus - it will be confusing starting differences with mutation differences.
I agree that is bogus. But does the paper actually attempt that? This isn't about genetics, as has been previously said.
In the 10th generation (from your example), each person has 2 parents from generation 9, 4 ancestors from generation 8, etc. That gives 1024 ancestors from generation 0. There are only 20 people in generation 0, so some of these ancestors appear multiple times. If I have calculated this correctly, then the generation 0 person directly above in your diagram occurs 252 times among those 1024 ancesters, so 252/1024 (around 25%) of the DNA comes from the generation 0 ancestor directly above. The generation 0 person 5 couples away appears only once, so only about .1% of the DNA comes from there. The 20 MRCA are all equivalent in the sense of ancestry (that they are ancestors), but they are not equivalent in genetic contribution.
In all honesty, I think you are giving this paper far more importance than it is worth. It isn't about genetics, it is about combinatorics. It has very little relevance to evolution or biology. It is of interest only because it is counter-intuitive and perhaps somewhat amusing. But, in the big scheme of things, it doesn't matter very much. You have spent more time on it than the paper was worth. My failure to actually read the original is, in my opinion, more realistic as to its unimportance.

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nwr
Member
Posts: 6412
From: Geneva, Illinois
Joined: 08-08-2005
Member Rating: 4.5


Message 42 of 76 (330099)
07-09-2006 2:39 PM
Reply to: Message 41 by RAZD
07-09-2006 1:36 PM


Re: How many generations?
The math is all in the appendices that anglagard has kindly linked in Message 28.
Okay, I have looked over that. I don't feel inclined to check the math in detail, since I don't think it worth the effort.
This is why I would rather talk about a MRCP as the genetics comes from the population rather than a specific individual.
That's a mistake, in my opinion. The set of MRCAs might not constitute a population, but instead are scattered among many populations. The term "population" is imprecise enough that I am not convinced MRCP is meaningful. The ancestor relation, on the other hand, is precisely defined so that MRCA is well defined (even if unimportant).
Using an individual in the concept makes people think there is one person who is the grand-whatever of all humans (with a typical tree type geneology image firmly in mind).
Only for people who misunderstand what this paper is describing. Admittedly, that might be most readers.
Talking about a {most recent common ancestor population} on the other hand is a much more realistic an image - and no, that population does not all have to be descendent from a single person or pair of individuals, they are descendent from their MCRP. The Homo sapiens in Ethiopia did not propogate from a singe individual Homo heidelbergensis but from a population of them. The Homo heidelbergensis did not propogate from a singe individual Homo ergaster but from a population of them. Etc. How big that population was we don't know.
You are still discussing this as if the paper were about genetics. It isn't.
Yes, they claim this is about geneology instead of genetics, so my "ancestors" include my great-aunt Matilda that died a "spinster" without having any children.
That would not be an ancestor, at least as the authors are using that term.
If we are talking geneological ancestors we are talking genetic ancestors by definition of ancestor.
If we are talking about genetic ancestors, we should be concerned about how much of our DNA was derived from a particular ancestor. But that genetic inheritance was never a concern of the paper. It was concerned only about the ancestral relation. Once again, it isn't about genetics, it is only about the combinatorial relationship of ancestry.
It is presented as fact, and it has infiltrated Wikipedia as such. The importance is not to the relevance of the paper but to reducing the false information being promulgated.
In my estimation, you are one of those promulgating false information by virtue of your repeated treatment of the paper as if it were about genetics.
The appropriate response of a biologist to this paper should be
Ho hum!
It also has to do with the preponderance of belief that mathematical models can 'prove' elements of reality, both in the general public and in science. All math can do is model reality, it cannot become reality, and it can only make predictions -- it cannot "prove" any theory any more than the evidence can "prove" it (which is to say it can't).
I prefer to say that the science models reality, and the math investigates the consequences of the model. In this case, the model involves the ancestral relationship, and this is pretty much straight out of biology. If you think there is a problem there, it isn't in the math. The model also involves assumption about the mixing of different populations, and I expect that is over-simplified and not completely realistic.
In any case, this paper is mostly a curiosity of little or no importance to biology.

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nwr
Member
Posts: 6412
From: Geneva, Illinois
Joined: 08-08-2005
Member Rating: 4.5


Message 47 of 76 (330184)
07-09-2006 11:19 PM
Reply to: Message 46 by randman
07-09-2006 10:13 PM


Re: Noah?
..., but you have no real evidence it isn't Noah, ...
If you would read the paper, or even read the rest of this thread, you might recognize that the paper being discussed has nothing to do with the idea that all descended from Noah, and it provides no evidence whatsoever to support such a view.

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nwr
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Posts: 6412
From: Geneva, Illinois
Joined: 08-08-2005
Member Rating: 4.5


Message 58 of 76 (330672)
07-11-2006 12:00 AM
Reply to: Message 56 by RAZD
07-10-2006 11:15 PM


Re: I stand corrected - now lets deal with the math problem ...
The irony (to me) is that now we are talking about someone who was (potentially) totally insignificant to most people alive today then eh?
That's the point I have been trying to make. I'm glad you finally get it.
My hackles are also raised when they use terminology like "would have lived" when they can really only mean "could at a minimum have lived" at best, and thus give a false sense of {truth\validity} to what is at best a very hypothetical and untested result.
Why allow your hackles to be raised about something that is totally insignificant?
To me, looking at it as a mathematician, it doesn't much matter if the MRCA is 1000 years earlier than they suggest. The interesting thing is that it is far earlier than the time of mitochondrial eve. Note that this is interesting in the sense that it is counter-intuitive. I still agree that the result is totally insignificant.
This model assumes a random mating of individuals
This doesn't really seem to be a big problem. Unless the mating is constrained to be within a bunch of separate inbreeding groups, it will be random enough for the kind of mixing needed.
Looking at the case of the Australian aboriginals, it is my understanding that they lived in relatively isolated tribes. In my opinion, they should have considered each tribe as if an island in their analysis. Within each tribal group the mating was probably random enough. But even if each tribe were considered an island, this would probably push the MRCA date back only 1000 years, and I don't see that as a big deal.
If nothing else, a basic human pattern is for sexually active individuals to have several children with the same mate.
The reports I hear, are that there is a lot of sleeping around that actually goes on.

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nwr
Member
Posts: 6412
From: Geneva, Illinois
Joined: 08-08-2005
Member Rating: 4.5


Message 61 of 76 (330755)
07-11-2006 8:43 AM
Reply to: Message 60 by sfs
07-11-2006 8:22 AM


Re: I stand corrected - now lets deal with the math problem ...
When you think about it, it's actually a pretty trivial result (that the common ancestor was very recent, I mean).
Yes, I agree. I see that in the text you quoted, I said "earlier" where I meant "more recent" (in relation to mitochondrial eve).
So I find the idea moderately interesting, but not worth publication in a top journal.
That's my reaction, too.

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nwr
Member
Posts: 6412
From: Geneva, Illinois
Joined: 08-08-2005
Member Rating: 4.5


Message 65 of 76 (331930)
07-15-2006 9:21 AM
Reply to: Message 64 by RAZD
07-15-2006 8:40 AM


Re: So what is this good for? Unchecked speculation?
It is the kind of result that seems to invite misunderstanding.
I also think we have a false sense of {past life} being highly similar to {our experience} and the sexual freedom of the last several decades ~ couple centuries to breed within a larger population. Look at the oppression of "half=breeds" in our own history and look at similar reactions in other societies (vietnam children).
Maybe.
My assumption is that in tribal areas (Australia, parts of Africa for example), most of the intercourse between tribes would occur after inter-tribal warfare, where the victors rape the losers and perhaps take some captive as slaves.
As noted before I would be more impressed if they modeled migration factors and then showed how that compared to actual known migration patterns rather than use known migration patterns to put "ports" on the results and artificially block a {possibly very high} migration rate from causing errors at those "ports" -- while allowing it to do so in the rest of the populations.
But then they would have to do hard work. The authors were pure mathematicians, not empirical scientists.
That wasn't intended as a criticism. The expertise of the authors is in mathematics, so that's where they should put their effort. By publishing the results, they make it available to researchers with different kinds of expertise. I would assume that anthropologists are best equipped to fill in some of the missing data.

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