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Author Topic:   Ancient bacteria with modern DNA, problem for evolution?
nwr
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Posts: 6412
From: Geneva, Illinois
Joined: 08-08-2005
Member Rating: 4.5


Message 53 of 77 (340702)
08-17-2006 12:17 AM
Reply to: Message 52 by randman
08-17-2006 12:07 AM


Re: for the lurkers
Okay, so its a scientific controversy. If it is a controversy, then it is being looked at, and people are devising experiments to settle the disagreement.
So there isn't any evo conspiracy here. It's just a controversy over data. Such controversies come up from time to time. I'm not seeing any cause for concern.

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 Message 52 by randman, posted 08-17-2006 12:07 AM randman has replied

Replies to this message:
 Message 54 by randman, posted 08-17-2006 12:23 AM nwr has replied

nwr
Member
Posts: 6412
From: Geneva, Illinois
Joined: 08-08-2005
Member Rating: 4.5


Message 55 of 77 (340709)
08-17-2006 12:51 AM
Reply to: Message 54 by randman
08-17-2006 12:23 AM


Re: got a relevant point?
I have no idea whether both sides are reasonable. I'm not a biologist, so I leave it to those in the area to settle the question.
There has always been controversy in science. And there always will be. If controversy ceases, then science will have ceased.
... and no creationist conspiracy exists too?
Creationists can think what they like. It is no concern of mine. It only becomes a problem when then try to force their religion into the science class.

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nwr
Member
Posts: 6412
From: Geneva, Illinois
Joined: 08-08-2005
Member Rating: 4.5


Message 71 of 77 (341115)
08-18-2006 3:09 PM
Reply to: Message 68 by randman
08-17-2006 3:39 PM


Re: selective acceptance of data
Hi, randman.
The puzzle for me, and I think for others, is why you consider this a problem for evolution or evolutionists.
The history of science is a succession of changes. Investigators are often finding data that appears to conflict with accepted theory. It is these apparent conflicts that drive much of the scientific discovery process.

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 Message 68 by randman, posted 08-17-2006 3:39 PM randman has replied

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 Message 72 by randman, posted 08-18-2006 3:54 PM nwr has replied

nwr
Member
Posts: 6412
From: Geneva, Illinois
Joined: 08-08-2005
Member Rating: 4.5


Message 73 of 77 (341141)
08-18-2006 4:13 PM
Reply to: Message 72 by randman
08-18-2006 3:54 PM


Re: a good start
what areas of evo models do you think could be affected by this find, assuming it and other ancient bacteria do indeed resemble modern bacteria?
It might require revision and refinement of assumptions about the molecular clock (as already suggested by Quetzal).
If an organism should happen to be well adapted to a fairly constant environment, there isn't any particular reason it has to change. My own expectation would be that mutations would contribute to an increase in variability. But if particular bacteria are already carrying a maximal amount of variability, there isn't anything that could increase.
Keep in mind that I'm not a biologist.

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 Message 72 by randman, posted 08-18-2006 3:54 PM randman has replied

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 Message 74 by randman, posted 08-18-2006 5:17 PM nwr has replied

nwr
Member
Posts: 6412
From: Geneva, Illinois
Joined: 08-08-2005
Member Rating: 4.5


Message 75 of 77 (341160)
08-18-2006 5:46 PM
Reply to: Message 74 by randman
08-18-2006 5:17 PM


Re: a quote from the original paper in the OP
If the bacteria is truly ancient, then the first consequence is probably not just a revision of the molecular clock concept, but perhaps an abandonment of molecular dating as valid altogether.
I don't see that. The worst I could see would be to change an equality to an inequality. That is, a measurement of age based on the amount of mutation might set a lower bound for the age instead a providing a reasonable age estimate.
But you are jumping the gun. As others have indicated, there might merely be a problem of contamination, resulting in bad data. Until you have eliminated that possibility, you cannot conclude anything. And even if that possibility is eliminated, further experimentation would be needed to better understand what is happening. Science theories aren't just invented on a whim, they come out of careful studies that attempt to understand the processes involved.
The evo stance is that environmental conditions would dictate stasis due to a lack of pressures to select for mutations.
As indicated before, I'm not a biologist. My knowledge of bacteria is particularly limited. For sexually reproducing creatures, one must distinguish between phenotype and genotype. My own view is that we should expect to see gradual evolution of the genotype, but punctuated equilibrium (periods of stasis and bursts of change) in the phenotype. During a period of phenotype stasis, the genome could be building up variation with mainly unexpressed genes (or rarely expressed genes), and at a later time and under selection pressures, some combination of the new genes could lead to relatively rapid change in phenotype. The change would involve some reorganization, in that rarely expressed genes would now be more commonly expressed.
So let's consider that we have evidence of bacteria evolving very little for 250 million years, and we cannot justify that is better suited in it's niche.
Only if that can be seen to happen for all organisms. That one particular group did not evolve, would just show an interesting peculiarity about that group.
I think it best to wait till all of the evidence is in.

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 Message 74 by randman, posted 08-18-2006 5:17 PM randman has replied

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 Message 76 by randman, posted 08-18-2006 6:13 PM nwr has replied

nwr
Member
Posts: 6412
From: Geneva, Illinois
Joined: 08-08-2005
Member Rating: 4.5


Message 77 of 77 (341191)
08-18-2006 8:09 PM
Reply to: Message 76 by randman
08-18-2006 6:13 PM


Re: a quote from the original paper in the OP
Either the molecular dating is wrong, or the dating based on the geology is wrong.
Those are two of the possibilities. There could be errors elsewhere.
Now, you and other raise the issue of contamination, but this is not the first ancient bacteria showing similarities to modern bacteria. Are we to continually assume contamination every time, even with stringent sterilzation measures?
It is known that contamination can be a problem when dealing with micro-organisms. You need to give this controversy time to play out.
Here is the view of it from a report in American Scientist.
So there appears to be a double-standard in the standards evos use to accept or reject data, stricter standards for data that is problematic for evos, ...
This isn't any different from what happens elsewhere in real life. If you were a bank security office, looking for possible forgery in checks, you would be far more concerned about a million dollar check than about a two dollar check. Data that is consistent with other observations actually provides very little new information. It isn't earthshaking, whether the data is properly obtained or not, because it doesn't report anything that isn't already taken for granted. But data that suggest a possible problem is very valuable if it turns out to be valid. Because of its importance, scientists want to be very careful to fully scrutinize it, and to not accept it without skeptical scrutiny. Science depends on such careful analysis.
This isn't a double standard.

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