Wow. One giant post of inanity.
First, your objection to the fossil record. There are clear transitionals in the fossils. Furthermore, I believe they are called foraminifera, but they have essentially the entire evolutionary history (in fossils). Unfortunately, I can't find a link to the evolutionary history I'm thinking of. Which means I might have the wrong organism in mind. Someone on this board knows what I'm talking about though, I suspect.
Second, the D. melanogaster experiments were not designed to test evolution. See, evolution has
two parts.
Natural Selection and [/b]Mutation[/b]. Tell me, did those experiments include natural selection in the design? No. They were designed, if I recall correctly, to test specific effects of mutations in certain genes. In order to design an experiment to test evolution, you not only need to cause mutation (such as with radiation), but have a selection factor. The drosophila melanogaster experiments were not designed to test evolution!
Oh, by the way, the human genome consists of 20-25,000 genes. The fruit fly? Around 13,000, like you say. So we have maybe twice the number of genes, but ten times the number of chromosomes. How many did you think we humans have?