If all cows have have hooves than that feature was some how shared widely to create a new species with millions of members that all reproduce compatibly.
Well, hooves aren't an all-or-nothing feature, as you can see by studying the well-documented evolution of the horse. The central toe got bigger, the outer toes became smaller, then vestigial, then vanished.
I will try an elaborate on what I meant.
If there are a million black and white dairy cows with hooves do they all originate from one original cow like creature that had a specific set of mutations to create the current appearance of the dairy cow?
For instance if I had a baby that had green skin that trait could only be passed on through his offspring.
Therefore doesn't that mean that every species can only descend from one pair? Unless two identical species can evolve alongside one another. Unless I'm missing the point somewhere.
My essential point though is that it seems hard for a genetic mutation happening in isolation in one organism could become a widespread feature. Unless there were lots on inbreeding.