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Author Topic:   Biological classification vs 'Kind'
Percy
Member
Posts: 22499
From: New Hampshire
Joined: 12-23-2000
Member Rating: 4.9


Message 251 of 385 (564301)
06-09-2010 5:03 PM
Reply to: Message 250 by BobTHJ
06-09-2010 4:48 PM


BobTHJ writes:
quote:
In actual fact, whatever level you examine life at, it looks as though it evolved. A simple desire for order is not enough to explain things like ERVs in our genome, shared genes between humans and chimps, biogeography, fossil stratigraphy, etc. because all of these things, had they been designed, were clearly designed to look as evolved as possible.
Disagree - based upon the evidence I have reviewed.
And what would that evidence be?
If you'd like to prove Dr. Wile wrong feel free to point me to evidence to the contrary. I'm certainly more than willing to examine it.
You haven't presented any evidence supporting anything Wile says, primarily because Wile himself presents no evidence. If you'd like to present some evidence for kinds or baraminology we'd be more than willing to examine it.
quote:
You have already been shown such evidence and you have hand-waved it away. The problem here is that with most animal species, the definition of baramin is loose enough to allow a little wiggle room. Bird/dinosaur fossils can be explained away by simply decreeing one to be a bird, one a dinosaur. Fish/amphibian fossils can be hand-waved away with "That's just a fish" or, if preferred, "That's just an amphibian". The only reason creationists can't play this game with humans and chimps is because you are unable to accept this particular example of common ancestry no matter what.
I'm not hand-waving anything away - I base my conclusions upon the evidence I have reviewed...
And what would that evidence be?
As I stated before, a detailed analysis of the supposed common ancestry between chimps and humans seems beyond the scope of this topic...
If human/chimp shared ancestry has any bearing on kinds or baraminology then it would be very precisely on-topic.
--Percy

This message is a reply to:
 Message 250 by BobTHJ, posted 06-09-2010 4:48 PM BobTHJ has not replied

  
Percy
Member
Posts: 22499
From: New Hampshire
Joined: 12-23-2000
Member Rating: 4.9


Message 253 of 385 (564311)
06-09-2010 6:50 PM
Reply to: Message 252 by BobTHJ
06-09-2010 5:50 PM


Please Focus on the Topic
How many consecutive off-topic posts are you planning to make? Can I get an estimate?
--Percy

This message is a reply to:
 Message 252 by BobTHJ, posted 06-09-2010 5:50 PM BobTHJ has not replied

  
Percy
Member
Posts: 22499
From: New Hampshire
Joined: 12-23-2000
Member Rating: 4.9


Message 255 of 385 (564329)
06-09-2010 9:38 PM
Reply to: Message 250 by BobTHJ
06-09-2010 4:48 PM


BobTHJ writes:
Here's a great paper on Darwin's failed predictions that helps demonstrate this point.
Gee, what do you know, another rule 5 violation of the Forum Guidelines. You do realize, I hope, that your link is completely refuted by this link. Of course I guess you'll just respond with this other link, and then I'll have to respond with yet another link, and we'll just keep firing the links back and forth and oh what a great discussion we'll have!
--Percy

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 Message 250 by BobTHJ, posted 06-09-2010 4:48 PM BobTHJ has not replied

  
Percy
Member
Posts: 22499
From: New Hampshire
Joined: 12-23-2000
Member Rating: 4.9


Message 268 of 385 (564745)
06-12-2010 8:20 AM
Reply to: Message 266 by BobTHJ
06-12-2010 2:44 AM


Re: Evidence, any time you're ready
BobTHJ writes:
I really am interested in the evidence...
You're having trouble finding evidence because your'e gravitating toward those whose views you agree with instead of those who know what they're talking about. You must seek out scientists who actually uncover and develop evidence. They tend to work at respected research institutions and to publish their work in peer-reviewed technical journals.
Does it really make sense to you that Biblical literalists working at Bible colleges or on their own, and who do not do any original research, and who believe eternity is at stake, and who advocate a variety of different views, are giving you an unbiased picture? Or could it be more likely that a community of scientists who are atheists and non-atheists, Christians and Jews, Moslems and Hindus, Americans and Palestinians, Chinese and Frenchmen, conservatives and liberals, and who reach the same conclusions of the evidence concerning evolution, are providing a far more accurate and unbiased perspective.
The information you should be seeking about baraminology is the evidence supporting its classification system. DNA studies showing how that system derives from the underlying genetics would be of primary importance.
--Percy

This message is a reply to:
 Message 266 by BobTHJ, posted 06-12-2010 2:44 AM BobTHJ has not replied

  
Percy
Member
Posts: 22499
From: New Hampshire
Joined: 12-23-2000
Member Rating: 4.9


Message 275 of 385 (564792)
06-12-2010 5:10 PM
Reply to: Message 271 by BobTHJ
06-12-2010 4:19 PM


Re: a deeper understanding
BobTHJ writes:
Based on Borger's baranome hypothesis, VIGEs (Variation Inducing Genetic Elements)...
What is the evidence that there is any such thing as VIGEs?
...would have operated with specific function at the point of creation and thereafter until partially or fully disabled by mutation.
Where in the genome are these "partially or fully disabled" VIGEs.
These VIGEs (which as mentioned earlier are transposons, insertion sequences, ERVs, etc.) worked to cause rapid adaptation and speciation by activating and deactivating various genes.
What is the evidence for "rapid adaptation and speciation" 4500 years ago (in other words, since the flood)? What is the evidence that they operated by "activating and deactivating various genes."
Since common design is apparent in a YEC model it would make sense that guinea pigs and humans would have a similar if not identical GULO gene at creation.
How many human/guidea pigs genes were identical "at creation?" You know what it means if too many of their genes were identical, don't you?
But the important question concerns evidence. Do you have any evidence that human and guinea pig GULO genes were identical at any time in the past?
It would also make sense that VIGEs in both kinds would operation in a similar fashion - making similar changes to those genes.
You've just added to the amazing thigns VIGEs can do. Not only can they "cause rapid adaptation and speciation by activating and deactivating various genes," but they can also make actual changes to genes. What is the evidence that anything like this has ever happened?
This also neatly explains the similarity in the GULO genes of humans and other primates.
You have again managed to complete an entire post without providing any evidence. Your story has no more evidence than any other fairy tale.
--Percy

This message is a reply to:
 Message 271 by BobTHJ, posted 06-12-2010 4:19 PM BobTHJ has replied

Replies to this message:
 Message 306 by Wounded King, posted 06-15-2010 9:55 AM Percy has replied
 Message 310 by BobTHJ, posted 06-15-2010 4:49 PM Percy has replied

  
Percy
Member
Posts: 22499
From: New Hampshire
Joined: 12-23-2000
Member Rating: 4.9


Message 278 of 385 (564796)
06-12-2010 5:35 PM
Reply to: Message 272 by BobTHJ
06-12-2010 4:45 PM


Re: Getting down to details
BobTHJ writes:
his also neatly explains the similarity in the GULO genes of humans and other primates.
What else could it possibly imply?
For example, I could build a nested hierarchy of automobiles.
Sure, if you ignore the history of the automobile industry, just like you're ignoring the natural history of life on Earth. When you figure out how innovations like diesels and intermittent windshield wipers can cross between unrelated clades like ships, trucks and cars you let me know. Entire new car companies arise with no automobile background, like Honda which started in lawnmowers - the first Civic had a 2-cycle engine. With automobiles the evidence screams out that there is no common ancestry, no nested hierarchy.
The YEC geological model has most sedimentary layers laid down during the global flood.
Where is there any evidence that most of the world's sedimentary layers were laid down in a short period of time? Where is there any evidence that most of these layers are the result of a single flood? Where is there any evidence that these layers are only about 4500 years old?
It follows then that simple marine bottom-dwelling animals (such as trilobytes) would be found in the lowest pre-cambrian/cambrian strata as these would be the first to be buried.
And how do you explain trilobite (not trilobyte) remains atop Mount Everest?
Larger and/or more advanced creatures would be buried later as they would be better equipped to survive against the rising waters and would survive longer.
And how do you explain both large and small creatures being found in both early and late layers? Why are clams found above mammals in some places?
Remember - your nested hierarchy is 95%+ accurate at categorizing creatures according to genetic and morphological similarities.
Where does this 95% figure come from?
Congratulations on another evidence-free post!
--Percy

This message is a reply to:
 Message 272 by BobTHJ, posted 06-12-2010 4:45 PM BobTHJ has replied

Replies to this message:
 Message 314 by BobTHJ, posted 06-15-2010 5:39 PM Percy has replied

  
Percy
Member
Posts: 22499
From: New Hampshire
Joined: 12-23-2000
Member Rating: 4.9


Message 279 of 385 (564797)
06-12-2010 5:46 PM
Reply to: Message 273 by BobTHJ
06-12-2010 4:54 PM


Re: Getting down to details
Bob, there's no such thing as a baranome in the real world. Prove me wrong.
--Percy
Edited by Percy, : Remove cheeky paragraph.

This message is a reply to:
 Message 273 by BobTHJ, posted 06-12-2010 4:54 PM BobTHJ has replied

Replies to this message:
 Message 281 by cavediver, posted 06-12-2010 6:23 PM Percy has replied
 Message 315 by BobTHJ, posted 06-15-2010 6:58 PM Percy has seen this message but not replied

  
Percy
Member
Posts: 22499
From: New Hampshire
Joined: 12-23-2000
Member Rating: 4.9


Message 280 of 385 (564799)
06-12-2010 6:15 PM
Reply to: Message 277 by BobTHJ
06-12-2010 5:21 PM


Re: Mutations and Information
BobTHJ writes:
Yes, you are correct. My knowledge of genetics has grown considerably since starting this discussion - so I need to withdraw my earlier statement regarding evolution adding information to the genome.
Kudos for the concession, but is there at least a little voice in the back of your head telling you that you are reaching too many conclusions in the absence of evidence? Most of the other stuff you're saying is just as wrong as your original claim that new information cannot be created through mutation. Remember how you felt when you made that claim? I bet you made it just as confidently as you did your other statements about the YEC model, baranomes and VIGEs.
Could I suggest a strategy of "Inform self first, reach conclusions later."
The traditional evolutionary model though is still riddled with problems.
It is your knowledge of biology (and geology, for that matter) that is riddled with holes.
In order for the creation of a new novel gene there must first be a duplication of an existing gene (recent research has shown this to occur at much lower rates than originally predicted)...
What was the original prediction and at what rate do they actually occur? I only ask because I think you're repeating something that someone else made up.
Even if all this comes together this process must occur simultaneously in 50+ genes to form a new novel mechansim for a complex organism.
If by this you mean that many different genes are experiencing gradual change through generations of time, then this is correct. Reproduction is imperfect and neutral and positive mutation gradually accumulate. Because of imperfect reproduction it isn't a question of how speceis change, but how do they ever stay as much the same as they do.
Yes, I understand there are other ways of obtaining new genes (frameshifts, activaiton of pseudogenes, etc.) but the above is the traditional best evolutionary model for the development of new features.
The gradual accumulation of point mutations is the easiest process to describe and understand, but I don't know that anyone within biology would describe it as the "best." Evolution is more a "whatever works" type of process.
Even given timeframes of millions of years it is highly improbable that even a few such new genes would be developed this way.
Could we see the math? I'm curious how you calculated the probability of a process you so poorly understand.
The evolutionary model also fails to explain the rapid variation and adaptation that has been observed in scientific experiments - such as the ability of bacteria to rapidly evolve and synthesize new nutrients.
You have got to stop just repeating everything you hear. Possibly the only correct sentence in your entire post was about adding information to the genome. When we can actually sequence the DNA of the bacteria both before and after the new ability and know precisely what mutational changes occurred, what is it that you think the evolutionary model doesn't explain about bacterial mutations and evolution?
Baranomes explain this rather well - the VIGEs are there specifically to cause this rapid adaptation - but if it can happen so rapidly - then why are millions of years required to develop new traits?
This is great! Finally something that can verified in the here and now. So in these experiments where bacteria rapidly evolve new abilities right there in the lab where we can observe precisely what is going on, you claim that there are VIGEs we could supposedly see that are driving the process. So where is the observational evidence for VIGEs?
--Percy

This message is a reply to:
 Message 277 by BobTHJ, posted 06-12-2010 5:21 PM BobTHJ has replied

Replies to this message:
 Message 316 by BobTHJ, posted 06-15-2010 7:29 PM Percy has replied

  
Percy
Member
Posts: 22499
From: New Hampshire
Joined: 12-23-2000
Member Rating: 4.9


Message 290 of 385 (564844)
06-13-2010 6:19 AM
Reply to: Message 282 by BobTHJ
06-13-2010 3:15 AM


BobTHJ writes:
The first thing that comes to mind is neanderthal. YEC scientists predicted through baraminology that neanderthal was not a human ancestor, nor a separate offshot of the primate clade, but a extinct species of the human holobaramin. This prediction was found to be correct when recent testing of the neanderthal genome showed evidence of interbreeding with humans.
YEC "scientists" did not predict the Neanderthals were not a human ancestor. They simply asserted that humans have no evolutionary ancestors. Baraminology makes the identical claim. If baraminology is science then tell us based on what evidence does it make this claim.
Can I presume that if you're willing to accept the findings of science that Neanderthal is not an evolutionary ancestor of humans that you're also willing to accept the findings of science that Homo egaster *is* our evolutionary ancestor?
--Percy

This message is a reply to:
 Message 282 by BobTHJ, posted 06-13-2010 3:15 AM BobTHJ has replied

Replies to this message:
 Message 319 by BobTHJ, posted 06-16-2010 2:42 AM Percy has replied

  
Percy
Member
Posts: 22499
From: New Hampshire
Joined: 12-23-2000
Member Rating: 4.9


Message 291 of 385 (564845)
06-13-2010 6:28 AM
Reply to: Message 288 by BobTHJ
06-13-2010 3:57 AM


BobTHJ writes:
Since you may not have caught my previous explanations I'll respond to these again - but going forward I'm just going to have to skip responses to these type of posts - nothing against you personally, I just don't have time to repeatedly clarify my positions.
Translation:
Everything I say is getting challenged and I don't have any evidence to support what I'm saying, so I'm just going to start ignoring posts that pose inconvenient questions.
Any time you're ready to present some evidence, Bob, we're here. The nature of science doesn't changed just because one has religious beliefs. Many of us have religious beliefs, but science still means having evidence for what you believe. What you're doing in this thread is religion because you're just stating what you believe. If you were doing science you would be stating the evidence for what you believe.
So if you have any evidence supporting kinds or baraminology, this is the thread to do it. We're coming up on 300 messages, don't you think it's time?
--Percy

This message is a reply to:
 Message 288 by BobTHJ, posted 06-13-2010 3:57 AM BobTHJ has replied

Replies to this message:
 Message 292 by Modulous, posted 06-13-2010 8:39 AM Percy has replied
 Message 321 by BobTHJ, posted 06-16-2010 3:12 AM Percy has replied

  
Percy
Member
Posts: 22499
From: New Hampshire
Joined: 12-23-2000
Member Rating: 4.9


Message 293 of 385 (564854)
06-13-2010 8:49 AM
Reply to: Message 292 by Modulous
06-13-2010 8:39 AM


Hi Mod!
I didn't forget that earlier post. It was made at a point in time where I believed Bob when he said he was interested in the evidence. As others have also noted, he misrepresented himself.
The Report discussion problems here: No.2 thread might be a better venue for these types of issues. Sorry we don't see eye to eye on this one.
--Percy

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Percy
Member
Posts: 22499
From: New Hampshire
Joined: 12-23-2000
Member Rating: 4.9


Message 294 of 385 (564885)
06-13-2010 3:25 PM
Reply to: Message 281 by cavediver
06-12-2010 6:23 PM


Re: Getting down to details
Did Wile close that blog to comments, or did I just forget how to use it?
--Percy

This message is a reply to:
 Message 281 by cavediver, posted 06-12-2010 6:23 PM cavediver has replied

Replies to this message:
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Percy
Member
Posts: 22499
From: New Hampshire
Joined: 12-23-2000
Member Rating: 4.9


Message 324 of 385 (565338)
06-16-2010 7:56 AM
Reply to: Message 306 by Wounded King
06-15-2010 9:55 AM


Re: a deeper understanding
Wounded King writes:
Taken simply as a term there are in fact several well characterised Variation Inducing Genetic Elements (VIGEs).
I had done a cursory search for the term at Google and Wikipedia and not found it, so am I correct in interpreting you as saying that while VIGE is not as yet a term used within biology, the genetic object it refers to does actually exist? Or is VIGE a real term?
Your technical lingo was a bit tough to follow, but it was pretty clear that you're saying that VIGEs have played a "significant role in genome evolution." You provided some references, but I'd probably find them tough to follow, too. If Borger is wrong about what he says about VIGEs, how do we know that?
--Percy

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 Message 306 by Wounded King, posted 06-15-2010 9:55 AM Wounded King has replied

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Percy
Member
Posts: 22499
From: New Hampshire
Joined: 12-23-2000
Member Rating: 4.9


Message 350 of 385 (565480)
06-17-2010 7:51 AM
Reply to: Message 310 by BobTHJ
06-15-2010 4:49 PM


Re: a deeper understanding
Hi Bob,
I read ahead in the thread a little bit, and I can see that you understand that Borger's ideas are only hypotheses, but you need to understand that he's only proposed them because they're consistent with his religious beliefs rather than the available evidence. You're holding out hope that if his ideas are ever tested that they'll prove out, but this isn't likely, for two reasons.
First, hypotheses not based upon real world evidence could only prove out through sheerest happenstance.
Second, and as you've noted but for the wrong reasons, for the most part creationists produce very little research. The creationist technical material is almost exclusively people like Borger misinterpreting mainstream research so as to give the appearance that it supports creationist views like a young Earth and the like.
There's no point in discussing untested hypotheses. You prefer to believe that one day they'll replace current theory, and who knows, maybe you're right. But it would be perverse to argue that the currently available evidence supports your favored hypotheses, because it does not. It not only doesn't support them, it doesn't even suggest them. It is only the influence of Genesis that suggests them.
One particularly significant difference of Borger's VIGEs from normal evolution is that it is directed. In his view evolution proceeded in a manner directed by prepositioned VIGEs rather than selected for by the environment. This doesn't explain adaptation. If evolution comes from within as directed by VIGEs with no input from the environment, how did adaptation ever occur?
It's very strange this creationist view that evolution actually *does* occur, but at a highly inflated rate over just a few thousand years. There's no evidence for this, it's just the influence of the Genesis story on creationist apologetics, but one thing's for sure, it would have produced a nested hierarchy. You have to concede as much because we agree that evolution produced all the species we see today, and evolution can only produce a nested hierarchy. There is such a thing as horizontal gene transfer between branches by various mechanisms, but the genetic contribution of descent completely overwhelms any small horizontal exchanges.
So since you accept that evolution is responsible for modern species diversity, we actually disagree on just two things: the time period, and how far back common descent goes. And genetic analysis of diverse animal genomes shows that there has been continuity of descent all the way back to way before Noah's ark and the species he took board.
In other words, it makes sense to you that chimps are related to gorillas genetically, because they both had a common ancestor aboard the ark. And it makes sense to you that chimps and gorillas are related genetically to monkeys because monkeys shared the same common ancestor. But the same types of analysis that reveal this genetic relatedness show that the common ancestor was responsible for more than just monkeys. Rodents, and lizards and fish and insects and ultimately bacteria also share a common ancestor with chimps, gorillas and monkeys.
Probably others have provided a link to the tree of life derived from genetic analysis, but I'll put the image here, click on it to display at full size:
The animal kingdom is in pink, we're near the top. Select a lineage on the perimeter and trace inward toward the center, and this will take you through the branch points where lineages come together. Somewhere in these junctions you'd like to draw a line and say that it goes no further, that before that point the lineages possess no commonality and therefore had distinct origins. But there's no hint of this in the genetic analysis. If a designer is responsible for what you think are the original species, he designed in a nested hierarchy.
--Percy
Edited by Percy, : Clarify.
Edited by Percy, : Grammar.
Edited by Percy, : Improve clarity slightly.

This message is a reply to:
 Message 310 by BobTHJ, posted 06-15-2010 4:49 PM BobTHJ has not replied

  
Percy
Member
Posts: 22499
From: New Hampshire
Joined: 12-23-2000
Member Rating: 4.9


Message 351 of 385 (565481)
06-17-2010 7:56 AM
Reply to: Message 314 by BobTHJ
06-15-2010 5:39 PM


Re: Getting down to details
quote:
And how do you explain both large and small creatures being found in both early and late layers? Why are clams found above mammals in some places?
Some sedimentary layers have been laid down in the "slow and gradual" way post-flood - but this thread doesn't cover geology.
We're not talking about geology. Or are you saying that baraminology is not informed by the geological context of fossils?
It's 95%+ (as in greater than 95%), and it is an educated guess, nothing more.
Nice guess. So I'll guess 100%. Prove me wrong. I hope you're not going to pull your old Abbot and Costello "third base" routine again and say "bats/dolphins."
--Percy
Edited by AdminModulous, : hidden potential thread derailment.

This message is a reply to:
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