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Author Topic:   Nasa news conference (re: Arsenic-based life form?)
crashfrog
Member (Idle past 1485 days)
Posts: 19762
From: Silver Spring, MD
Joined: 03-20-2003


Message 33 of 78 (594295)
12-02-2010 10:05 PM
Reply to: Message 31 by Bolder-dash
12-02-2010 9:58 PM


Dr. A, how would you like to pay up?
Why would he pay up? You lost. Your bet was that they would "find nothing", but they didn't "find nothing", they found something - a bacteria that can metabolize and incorporate arsenate instead of phosphate.
Did you think you were making a bet that they would announce alien life? That's not the bet you said you were making, though.

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 Message 31 by Bolder-dash, posted 12-02-2010 9:58 PM Bolder-dash has replied

Replies to this message:
 Message 34 by Bolder-dash, posted 12-02-2010 11:14 PM crashfrog has replied

  
crashfrog
Member (Idle past 1485 days)
Posts: 19762
From: Silver Spring, MD
Joined: 03-20-2003


Message 37 of 78 (594310)
12-03-2010 12:01 AM
Reply to: Message 34 by Bolder-dash
12-02-2010 11:14 PM


Oh, I see. Nasa is now in the business of cataloging our pond scum. Gee, I was thinking they were in the space exploration business.
They're in the science business, actually.
So how long, and how much money has been spent looking for extra-terrestrial life?
Not all that much, actually. How much money do you think it costs to listen to the radio?
How long has SETI been looking for a signal from green men and how many billions have been spent with nothing to show?
"Nothing to show?" Quite wrong.
Wow! signal - Wikipedia

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crashfrog
Member (Idle past 1485 days)
Posts: 19762
From: Silver Spring, MD
Joined: 03-20-2003


(1)
Message 38 of 78 (594341)
12-03-2010 1:55 AM


BTW, just wanted it on record:
crashfrog in September writes:
I think [alien life] would have something analogous to DNA, but it wouldn't necessarily have to be DNA - the phosphate-ribose backbone and the specific nucleobases seem kind of arbitrary. It's not hard to imagine something like an erythrose-arsenic backbone with funny bases, like hypoxanthine and inosine.
Message 14
Not the world's most amazing prediction (yet, somehow, better than any "prophecy" Buz has ever shown in the Bible...)

  
crashfrog
Member (Idle past 1485 days)
Posts: 19762
From: Silver Spring, MD
Joined: 03-20-2003


Message 48 of 78 (594458)
12-03-2010 1:21 PM
Reply to: Message 45 by Dr Jack
12-03-2010 8:16 AM


Re: Disappointing Announcement
That a bacterium has successfully evolved a means to substitute one of the absolutely fundamental building blocks of every key cellular mechanism and structure is most certainly a "big whoop".
I don't think it's "every", though. Actually I don't think they even checked "every", they cultured the bacterium on an arsenate media and then found arsenate in the bacterium's DNA. So, at best all they know is that this strain can substitute arsenate for phosphate in deoxynucleotides.
That's pretty cool, but is there evidence of arseneylation of proteins, for instance? (Activating enzymes by phosphorylation is another important biological function of phosphate.) Just based on the morphological differences that emerge in the cells on arsenate media seems to indicate that the changeover isn't a completely transparent process for the cell, so it wouldn't surprise me if these unique nucleotide-arsenates are being localized to very specific cell processes.
I'm not trying to be all up on PZ's dick about this (hometown shout-out, yo!) but I think he's mostly right - this is probably going to merit little more than a sidebar in most biochemistry texts. It's cool, but not really a game-changer. Most people studying biology or biochemistry already kind of assume that the only inviolable rule is that there are no inviolable rules.

This message is a reply to:
 Message 45 by Dr Jack, posted 12-03-2010 8:16 AM Dr Jack has replied

Replies to this message:
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crashfrog
Member (Idle past 1485 days)
Posts: 19762
From: Silver Spring, MD
Joined: 03-20-2003


Message 51 of 78 (594466)
12-03-2010 2:04 PM
Reply to: Message 49 by Dr Jack
12-03-2010 1:54 PM


Re: Disappointing Announcement
If it's correct that the phosphate groups in ATP are being replaced by arsenate, at the researchers claim, then this would mean that proteins are being arseneylated.
Not necessarily. Maybe the arsenic-substituted ATP is specifically directed to nucleic acid synthesis.
I'd like to know if I'm wrong, though.
And I would put good money that if you'd asked the world's molecular biologists last Tuesday whether this is something we'd find they'd have lumped down pretty heavily on the "not on this Earth" side of the fence.
Well, I'd take that bet, I guess, but it depends what you're asking. Are you asking them if we would ever find "arsenic-based life", as this has been erroneously described; or are you asking them if we would ever find bacteria with mutations that have allowed them to be arsenic-tolerant? I don't think you'd have found many skeptics for the latter point.

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crashfrog
Member (Idle past 1485 days)
Posts: 19762
From: Silver Spring, MD
Joined: 03-20-2003


Message 55 of 78 (594480)
12-03-2010 2:47 PM
Reply to: Message 53 by Taq
12-03-2010 2:34 PM


Re: Disappointing Announcement
Something as conserved and basic as ATP was replaced by new chemistry.
New in what way? Arsenate is pretty similar, chemically, to phosphate. That is, after all, why it's a poison and why these bacteria can use it.
Genuine new chemistry would be something like the UWash group that designed a new enzyme that catalyzes a Diels-Alder reaction ("Computational Design of an Enzyme Catalyst for a Stereoselective Bimolecular Diels-Alder Reaction", Science 329, 309) That's a form of chemistry that, to our knowledge, no living thing performs.
Again, I think this is neat - it's just not a game-changer. They only found it because they already speculated it was possible, and on that basis they went looking for it just precisely where you would expect to find it - a low-phosphorus, high arsenic environment. Didn't I speculate about this possibility a few months ago? I assure you, I'm not clairvoyant, I just made a guess based on phosphorus and arsenic being in the same period. I made a point about competition, too, and that holds up - when phosphorus is present, I doubt this strain uses any arsenic at all.

This message is a reply to:
 Message 53 by Taq, posted 12-03-2010 2:34 PM Taq has replied

Replies to this message:
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crashfrog
Member (Idle past 1485 days)
Posts: 19762
From: Silver Spring, MD
Joined: 03-20-2003


Message 58 of 78 (594507)
12-03-2010 4:50 PM
Reply to: Message 57 by Taq
12-03-2010 4:29 PM


Re: Disappointing Announcement
I guess that the coolness of this is quite subjective, but from my own view as someone who has worked in the lab with metabolism and protein chemistry this is pretty cool stuff.
I'm not saying it's not cool.

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crashfrog
Member (Idle past 1485 days)
Posts: 19762
From: Silver Spring, MD
Joined: 03-20-2003


Message 75 of 78 (595028)
12-06-2010 10:29 AM
Reply to: Message 68 by Rrhain
12-04-2010 2:32 PM


Their experiments are highly suggestive, but they didn't actually look at the DNA strands directly.
I'm not sure that's correct. They did tests where they cultured on radiolabeled arsenate media and then fractioned the cells by organic extraction and centrifugation, and they found their radiolabeled arsenate in the fractions corresponding to proteins, nucelic acids, and lipids.
That's pretty suggestive, I would say.

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