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Author Topic:   Evolution Requires Reduction in Genetic Diversity
Faith 
Suspended Member (Idle past 1471 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 915 of 1034 (759688)
06-14-2015 12:37 PM
Reply to: Message 913 by Admin
06-14-2015 9:21 AM


Re: macroevolution not impossible -- it has been observed.
If the forces you've identified (genetic drift, new allele combinations) can produce significant phenotypic change in the absence of selection simply by isolating a small subpopulation, why is this never observed?
I've given plenty of examples where it's observed.
How can a subpopulation become a genetically new species simply by losing alleles and creating new allele combinations, since all the alleles it does have already exist in the main population? If this happened over and over again in the past, why are there no examples in the real world?
There are plenty of examples, you just interpret them differently and refuse to try to understand what I'm saying.
You keep saying "genetically new species," I've never said that. The same way breeds of cattle developed out of the wild herd, or the Galapagos tortoise from the mainland tortoise or the different finch beaks from the original finch, that's what I'm talking about and I've never said they are a new species; that's why I call them a subspecies, they are a race or breed or variety not a new species in the sense of macroevolution. There is no such thing as a genetically new species in the sense of macroevolution which speciation supposedly represents. I continue to think it possible that a daughter population of the same species could lose the ability to interbreed with the others.
I'm finding this discussion so obnoxious, your responses, HBD's etc, there is really no point in continuing.

This message is a reply to:
 Message 913 by Admin, posted 06-14-2015 9:21 AM Admin has replied

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Faith 
Suspended Member (Idle past 1471 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 918 of 1034 (759694)
06-14-2015 1:16 PM
Reply to: Message 917 by PaulK
06-14-2015 12:59 PM


Re: macroevolution not impossible -- it has been observed.
No. You can't give any examples where it's been observed to happen. Simply examples where you assume that's what happened. That isn't the same thing.
Where what has been observed to happen? Since you go on to the bottlenecked seals it's clear you have something completely differe3nt in mind than I've said.
So, the question is why can't you show that that happened. Why can't you point to new features in elephant seals, since they are one of your chosen examples and where the bottleneck occurred in historical time. Surely they should be a perfect example.
To ask that question means you don't understand anything I've said. I don't expect the bottlenecked seals to recover, it's the silly people who think mutations will come along and give bottlenecked creatures a new start who think they can. I don't think mutations do anything helpful AS A RULE, they may as the occasional fluke but that's about it. I don't expect the seal to recover genetically or the cheetah.

This message is a reply to:
 Message 917 by PaulK, posted 06-14-2015 12:59 PM PaulK has replied

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Faith 
Suspended Member (Idle past 1471 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 922 of 1034 (759735)
06-14-2015 7:39 PM


Back to HBD's Chart
This thread seems to have found swamp level and I have no idea how it got there or how to get it out. NOBODY is making any sense. I was going to try to slog my way through all the posts I've missed but that doesn't seem like the productive direction right now.
As I recall, things started to go awry when HBD posted his chart and wanted me to see if I agree with it. I couldn't figure out the chart and I still can't and if it's been explained effectively I've missed it.
In any case I thought that might be the place to begin if there's any hope of getting the thread back on track, and there may not be by the look of it.
But I'd like to put up that chart again and ask HBD to answer some questions about it:
Diversity within pop BDiversity between A and BAffect all loci
MutationincreaseincreaseNo
MigrationincreasedecreaseYes
DriftdecreaseincreaseYes
Selectionincrease/decreaseincrease/decreaseNo
HBD, would you please answer these questions:
1, First, in relation to the diagram you usually include with the chart: Are those two subpopulations, the larger A and the smaller B, separate populations of the same species geographically isolated from each other, as Percy said, but you don't know what relation there is between them, i.e., which one is daughter or granddaughter or any such relation at all?
2. Is there any particular reason to include the Metapopulation in that diagram as far as interpreting the chart goes?
3. About the chart:
First, Mutation:
1) You want me to say if I agree that a mutation would bring about an increase in genetic diversity / variability within Population B (the smaller of the two)? (I'll answer when I find out if these restatements are correct).
2) Second, you want me to say if I agree that a mutation would bring about an increase in genetic diversity / variability "between the two subpopulations A and B" and here I really don't know what you mean by "between." Where does this mutation occur and what doers "between" mean?
3) Affect all Loci? refers to both populations or what?
4. Second, Migration:
1) You want me to say if I agree that migration would bring about an increase in genetic diversity / variability "within" subpopulation B (the smaller one). Just for the sake of orientation, does this mean migration into B from A, or from some unknown source?
2) Second, you want me to say if I agree that migration would bring about a DECREASE in genetic diversity / variability "between the two subpopulations A and B" and again I'm having trouble with the word "between." In fact I can't even come up with a very clear question. If they are sharing individuals from one to the other or perhaps between both there shouldn't be an increase or decrease in the total between them, so I have no idea what this means.
3) Again, Affect all Loci in both subpopulations or what?
5. Third, Drift:
1) You want me to say if I agree that drift would bring about a DECREASE in genetic diversity / variability "within" subpopulation B (the smaller one). As I understand drift, I can answer Yes to this now, but there’s always the possibility I don’t understand drift the same way you do.
2) Second, you want me to say if I agree that drift would bring about an INCREASE in genetic diversity / variability "between the two subpopulations A and B" and again I'm having trouble with the word "between." What relationship is there between the two populations? Why should drift affect both?
3) Again, all loci where?
6. Fourth, Selection:
1) You want me to say if I agree that selection would bring about both INCREASE AND DECREASE in genetic diversity / variability "within" subpopulation B (the smaller one). I have NO idea what this means.
2) Second, you want me to say if I agree that selection would bring about both INCREASE AND DECREASE in genetic diversity / variability "between the two subpopulations A and B" and again I have no idea what this means.
3) Again, all loci where?
I hope you can see why I have these questions and clarify so that maybe I COULD respond to the chart.
Thanks.

Replies to this message:
 Message 923 by Admin, posted 06-14-2015 8:18 PM Faith has replied
 Message 931 by herebedragons, posted 06-14-2015 11:34 PM Faith has replied

  
Faith 
Suspended Member (Idle past 1471 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 924 of 1034 (759742)
06-14-2015 8:21 PM
Reply to: Message 923 by Admin
06-14-2015 8:18 PM


Re: Back to HBD's Chart
Oh I fully intend to try to get through all the posts eventually, you can lay down your stick or switch, or is it a scepter?
Edited by Faith, : No reason given.

This message is a reply to:
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 Message 925 by Admin, posted 06-14-2015 9:08 PM Faith has replied

  
Faith 
Suspended Member (Idle past 1471 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 926 of 1034 (759747)
06-14-2015 9:11 PM
Reply to: Message 925 by Admin
06-14-2015 9:08 PM


Re: Back to HBD's Chart
WHAT "progress and continuity? All I see is an incredible morass of straw man arguments and really really demented failures of understanding, and your non-moderator-style blaming it all on me does NOT encourage participation in what is really your own personal viewpoint.

This message is a reply to:
 Message 925 by Admin, posted 06-14-2015 9:08 PM Admin has replied

Replies to this message:
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Faith 
Suspended Member (Idle past 1471 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 928 of 1034 (759749)
06-14-2015 9:40 PM
Reply to: Message 927 by NoNukes
06-14-2015 9:26 PM


Re: Back to HBD's Chart
Pardon me, but your track record here is the worst of the worst so your opinion on the procedures is the least of the least in my judgment. If I had one good partner to work with you bunch of self-aggrandizing bullies wouldn't stand a chance.
BACK OFF AND LET'S SEE IF HBD ANSWERS MY QUERIES.
Edited by Faith, : No reason given.

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Faith 
Suspended Member (Idle past 1471 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 933 of 1034 (759804)
06-15-2015 11:24 AM
Reply to: Message 931 by herebedragons
06-14-2015 11:34 PM


Re: Back to HBD's Chart
NOBODY is making any sense.
I realize part of the problem is we are working with two different paradigms. That does make it difficult and I try to be sensitive to that.
Thank you, I'm glad somebody is at least trying.
The metapopulation would indicate that both populations are the same species and can interbreed. Yes, 'A' and 'B' are separated by some type of geographical barrier. In order to talk about migration, we should not think of this barrier as complete, but will allow some level of migration between populations. The important thing is that these are independent populations.
OK, that's clear now.
What is the relationship between them? I am not sure how it matters. The diagram is rather abstract and simply represents a population that has been split by some geographical barrier. Maybe population 'B' got blown by a storm to an island; or a road was put in that separated a population of snails; or they are just in fields far enough away from each other that they rarely come in contact, ... any imaginable scenario.
I meant genetic relationship: cousins, fourth cousins once removed. But I think you were clear enough above, that they are two independent populations of the same species, the genetic relationship not being important.
A better question may be that if we sampled these populations how would we tell which was the parent and which was the daughter population? Could we even tell which was which? You hypothesis is that the population with the least amount of genetic diversity would always be the daughter population.
Well, there are exceptions, such as when a population split is pretty much right down the middle. Then each population would get a new set of allele frequencies but roughly the same amount of genetic diversity, or "allelic possibilities." By the way I like "allelic possibilities" as a way to say what I mean by genetic diversity. But if it's confusing I'll forget about it.
Within populations: Population 'A' has a certain amount of genetic diversity. What the chart indicates is how that particular factor affects the genetic diversity within the population. A mutation in population 'A' would add an allele to the pool and so would INCREASE diversity.
OK, yes, that one I agree with.
Between populations: Population 'A' and 'B' both have a certain amount of genetic diversity. The question the chart addresses is how does the factor in question affect this diversity between these populations.
This is still hard to grasp.
What if I rewrite your sentence, "The question the chart addresses is how does the factor in question affect this diversity between these populations of the two populations combined?
To which I would then answer a mutation in either population would increase it. But then it gets more confusing:
Over time the populations will become increasingly different; that is, diversity will increase.
We're talking about one mutation in one of them, right? Are you saying that over time that one mutation will bring about increasing diversity? Why? Isn't diversity basically the number of alleles or "allelic possibilities" in a population? Wouldn't one mutation between the two increase the diversity only by that one mutation?
Or maybe they will become more similar and so diversity will decrease.
Similar how? Again, isn't genetic diversity the number of alleles or "allelic possibilities?" Over time low-frequency alleles may drop out of a population altogether and that could cause a decrease in genetic diversity in one and therefore in the combination of the two, but I think you'd have to specify that this is happening, it can't just be assumed.
So "between populations" addresses how these factors will affect the differences, or the diversity, between the two populations. A mutation in either population (assuming the exact same mutation does not occur in both populations) will INCREASE the diversity between the populations.
That part is clear but the rest isn't clear at all.
Affect all loci addresses how the factor affects the loci. Does it affect them all equally or does it only affect some loci and not others? Mutation will only affect the loci that mutates, not other loci.
Yes, including what Percy points out, anything beyond a particular locus that may also be changed by the particular mutation, though wouldn't just one locus most often be all that's changed?
I think I'll stop here and let you respond to this much because I'm still having problems with the "between" factor that should be dealt with before moving on.
Edited by Faith, : No reason given.

This message is a reply to:
 Message 931 by herebedragons, posted 06-14-2015 11:34 PM herebedragons has replied

Replies to this message:
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Faith 
Suspended Member (Idle past 1471 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 937 of 1034 (759888)
06-15-2015 7:45 PM
Reply to: Message 936 by herebedragons
06-15-2015 1:41 PM


Re: Back to HBD's Chart
Admin writes:
I think it might be more clear if the diversity within a population were referred to simply as diversity, while the diversity between populations were referred to as diversity difference.
HBD writes:
I proposed such terminology, but Faith didn't like it. Not really sure why but I tried to stick with a term she is comfrotable with since I didn't feel it was that much of a issue.
I thought you were equating genetic diversity with "difference" or "difference in diversity" or something like that. I can't see how they are the same.
But now it seems the chart is asking for the difference between the genetic diversity in each of the two populations. Is this right? That's a lot easier to understand, but it also implies needing to know what the genetic diversity of each was before the mutation or other event on the chart took place. Yes or no?

This message is a reply to:
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Faith 
Suspended Member (Idle past 1471 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 938 of 1034 (759889)
06-15-2015 7:50 PM
Reply to: Message 935 by herebedragons
06-15-2015 1:25 PM


Re: Back to HBD's Chart
I just answered your other post with the answer that belongs here I think. So the question on the chart is what is the difference between the genetic diversities in each of the populations as a result of each category, beginning with mutation? And again, just as you lay out here what the difference would be if the populations had identical genetic diversity, wouldn't whatever the actual diversity is need to be known in order to answer the question on the chart? And yet there is no indication of that on the chart.
The table again, for reference:
Diversity within pop BDiversity between A and BAffect all loci
MutationincreaseincreaseNo
MigrationincreasedecreaseYes
DriftdecreaseincreaseYes
Selectionincrease/decreaseincrease/decreaseNo
Edited by Faith, : No reason given.
Edited by Faith, : No reason given.

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Faith 
Suspended Member (Idle past 1471 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 940 of 1034 (759896)
06-15-2015 8:15 PM
Reply to: Message 939 by Admin
06-15-2015 8:10 PM


Re: Back to HBD's Chart
Oh OK, that simplifies things.

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Faith 
Suspended Member (Idle past 1471 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 941 of 1034 (759898)
06-15-2015 8:31 PM
Reply to: Message 931 by herebedragons
06-14-2015 11:34 PM


Re: Back to HBD's Chart: Migration
Second, Migration:
... Just for the sake of orientation, does this mean migration into B from A, or from some unknown source?
It means migration between populations 'A' and 'B'. Remember that to properly consider migration, we need to think of it as gene flow, not just individuals moving around.
Of course
So, migration would be a member of population 'A' mating and having offspring with a member of population 'B' (or visa versa).
Vice versa? So this is two-way migration? Affecting both populations?
So what happens to the diversity of population 'B' when a member of population 'A' migrates to population 'B'? It will tend to INCREASE diversity within population 'B' because it would introduce alleles that exist in population 'A' that do not exist in population 'B'. It will tend to DECREASE diversity between populations 'A' and 'B' because alleles that exist in population 'A' that don't exist in 'B' will be moved into 'B' and will reduce the differences between populations.
Now it sounds one-way. But the phrase "between populations A and B" continues to confuse. Why not say, just as diversity within population B is increased, diversity within population A is decreased? But OK I get that for whatever reason the emphasis is on the "differences between."
Migration affects all loci because individuals are moving and introducing their whole genome into the other population.
Yes.
Edited by Faith, : No reason given.
Edited by Faith, : No reason given.

This message is a reply to:
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Replies to this message:
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Faith 
Suspended Member (Idle past 1471 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 944 of 1034 (759924)
06-16-2015 8:32 AM
Reply to: Message 931 by herebedragons
06-14-2015 11:34 PM


Re: Back to HBD's Chart: Drift
OK, you're doing a good job making this somewhat coherent. However, I'm probably not going to consistently keep in mind why it's a decrease "between populations" for migration because it doesn't really make sense to me that the decrease isn't IN the population that's losing the diversity.
And I also have a feeling Drift may not make a lot of sense, but onward nevertheless.
Genetic drift results when individuals are removed from the population regardless of their relative fitness. It is the result of serendipitous events and can eliminate even the most fit individuals.
How does this show up in actuality. That is, can you recognize drift just by looking at a population, of, say, a herd animal? And what would you see? I've had the general picture in mind of a subpopulation forming within a population but apparently this isn't correct?
So genetic drift refers to fluctuations in allele frequency solely by chance as a result of sampling errors. (Note: The frequency of an allele is also the probability that the allele will be selected at random).
The concept of "sampling error" has never made any sense to me although I've encountered it many times in reading about drift. I don't know what to picture.
The most significant source of genetic drift comes from the fact that only a small proportion of all available gametes are used to create the next generation.
What is another source? How much occurs at the gamete level?
Some gametes fail to fuse with another gamete (for example, think of how many sperm are produced in mammals with only 1 or 2 that fertilize the egg) and of those that do form zygotes, only a small proportion may survive. Think about a fish that may lay thousands of eggs but most of them are eaten when they are still fry. This "sampling" is likely to result in a different allele frequency than that of the parent population.
And yet this is normal, it's how the reproductive system works, so why is there this apparently to-be-expected "error?"
The ultimate result of drift is that alleles can be fixed purely by chance. This could allow slightly deleterious alleles to become fixed. This effect can be very pronounced in small populations.
So drift tends to DECREASE diversity with a population because it is randomly removing alleles from the population. Drift tends to INCREASE the diversity between the populations since it is a random process it cannot be expected that each population will be "drifting" in the same direction. It will affect all loci because it involves whole individuals and their whole genome, not just specific loci.
I can accept the assessment of decrease within and increase between from the description you give even without really understanding what it is. And all loci.

This message is a reply to:
 Message 931 by herebedragons, posted 06-14-2015 11:34 PM herebedragons has replied

Replies to this message:
 Message 985 by herebedragons, posted 06-24-2015 11:59 PM Faith has replied

  
Faith 
Suspended Member (Idle past 1471 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 945 of 1034 (759925)
06-16-2015 8:42 AM
Reply to: Message 931 by herebedragons
06-14-2015 11:34 PM


Re: Back to HBD's Chart: Selection
I'm mostly just trying to get through this now. I get the general gist of the chart much better but it's probably still going to give me problems, especially with the "between" concepts. I also can't see how it relates to anything I've been arguing but I guess you'll get to that.
On to Selection jjust to try to get the whole thing covered,.
Fourth, Selection:
... selection would bring about both INCREASE AND DECREASE in genetic diversity
Increase OR decrease. Selection is kind of a difficult one. It will probably take more explaining that I have time for now, but I will at least explain the chart.
Some alleles would tend to be favored and would increase in frequency, some alleles would be less favorable and would tend to decrease in frequency. As selection continues to act on the population the tendency would be that diversity within that population will DECREASE as the population moves towards an optimum fitness. However, there are situations where diversity can INCREASE such as with heterozygote advantage (where the heterozygote is more fit that either homozygote).
If different selection pressures are operating on each population we would expect diversity between the two populations to INCREASE as in each population different alleles or combinations are being favored. However, if two populations are already slightly diverse and the same selection pressure begins to act on both populations, then they will become more similar, or diversity will DECREASE.
It does not affect all loci because, in general, only loci that are being selected for or against will be affected.
Like I said, selection is not quite as straight forward as the others and is a bit more difficult to grasp. But depending on the situation, either a decrease or an increase can be expected (not both at the same time).
it's actually a lot easier to grasp than Drift.
Also keep in mind that these are all TENDENCIES. This is what these factors TEND to do. The opposite effect may occur for short periods of time or under special circumstances.
Hope that helps clear it up. I realize selection will need to be dealt with more vigorously, but hopefully the others make sense.
You may have to deal more with selection, not sure, but as I said, I think I get it better than I get Drift.
At least I can keep in mind what each category is and why there is an increase or decrease indicated on the chart, without completely understanding it.

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Faith 
Suspended Member (Idle past 1471 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 954 of 1034 (759942)
06-16-2015 10:33 AM
Reply to: Message 946 by RAZD
06-16-2015 9:08 AM


Re: recovery
So the question to you would be: do you think humans have reached the end of the road if they have made these varieties but have not made a new species?
The end of the road isn't reached until all genetic possibilities have been exhausted. Human beings have a lot of genetic diversity left as far as I can see.
Well, I'd go with genetic drift except I keep finding out there seems to be some way I'm not getting genetic drift. I can't make sense out of the definition "random sampling." The best I can do with it is random selection which implies a random change in the look of a population over time in the direction of a homogeneous subpopulation within the population. Best I can do with the concept. But if it's anywhere in the ballpark then it's one of those "subtractive" processes like a population split that I keep saying can eventually form new races or subspecies and does so by losing alleles for traits other than those that are coming to characterize the new subpopulation.
I think you may be making more of it than is necessary.
Genetic drift doesn't care about how a species looks, survives or mates, etc.
It is SO unnecessary and confusing and a waste of time to say such things.
Think of a population and then have half that village population killed by a volcanic eruption: those that survive do so because they were not there at the time, not by any special trait of their own compared to those that perish. It's like a lottery with some winners and some losers.
Those that survive are the parents of the next generation. What alleles they have would not confer an advantage to survive another eruption.
That is in many ways quite similar to the population splits I've been talking about, being a random selection of alleles without any regard to fitness, except all the genetic stuff survives rather than dying as in drift.
So I'd agree that the changes aren't due to any selection pressure on the traits themselves, but due to a random favoring of some traits. ...
I would not say "favoring" as that implies some intrinsic value to the survivors compared to the victims that doesn't exist.
The word "random" is supposed to take care of that implication. Could say "selection" again but that has the same implication. I can't think of a word for the phenomenon that wouldn't have that implication.
Consider everyone flips a coin and the heads then form a subpopulation and the tails form a second subpopulation -- the mix of alleles available in each population is a purely random distribution of those in the parent population, based only on what the individuals that got heads had and what the individuals that got tails had.
Isn't that what I said? I understand the process, what is apparently needed as a more neutral term and I can't come up with one.
... But I think you are overlooking the fact that the initial dividing into small bands as they spread out in itself will bring about new allele frequencies that would already affect the look of the band over time with or without additional genetic drift.
But that IS genetic drift -- the "small bands" would not necessarily have the allele distribution of the parent population, but whatever alleles they have become the pool of alleles for their descendants.
This is what I've been describing forever, but apparently you haven't noticed. If genetic drift randomly destroys individuals it's not quite the same, although I have thought it similar enough to say so, and HBD disagreed. In any case the small bands would DEFINITELY not have the allele distribution of the parent population but completely different allele frequencies, which is how the new traits emerge.
How is that selective pressure "demonstrated" as you claim it is though? I don't see any need for selective pressure at all. ...
Perhaps a misunderstanding -- I said that there was no apparent selective pressure.
It seemed clear you said it was demonstrated but I'll have to check later.
... Why wouldn't the new allele frequencies created by the initial formation of the band of migrants be enough to explain it?
Same old alleles different frequencies, still not enough to be that different from the parent population to account for the world wide variation seen.
I'm absolutely certain it is, just as you all think not, and there really isn't any proof one way or the other. You imagine mutations making the big differences, where's the evidence?
Changes would be due to mutations and genetic drift, so that things like skin color and eye color and hair color and hair curliness\straightness etc would vary from one population to the other.
All that is built into the human genome, new traits emerging when new allele frequencies favor it.
These mutations, while not necessarily selected do still mean that the mutations can be tracked from population to population, and from that analysis determine the general paths of migration of the exploratory populations.
What's being tracked is built-in allelic possibilities, called mutations from the ToE belief in mutations.
Not up to looking at a link right now. (The Human Journey: Migration Routes )
Yes, like the finches' beaks are adapted to the foods they eat, like that large-headed lizard has adapted to a particular food its stronger jaws can handle, and so on. But the question I keep raising is how you know the creature genetically changed to adapt to the environment when striking changes can occur simply from the new allele frequencies caused by an isolated small population? ...
Except when they exceed the range provided by the previous alleles, and when genetic analysis shows mutations at specific locations: this is increasingly being done, and the evidence to date has been that mutations make new alleles (modify old ones) rather than it just being a selection of existing alleles.
What evidence? The evidence is that mutations accomplish very little of use to any organism. Just consider that all jar and PaulK could come up with in their recent posts are the sickle cell example, which offers a protection against malaria at the cost of sickle sickness and death, wonderful gift of mutation. And that other familiar one, can't think of it right now. WONDERFUL track record for mutations. There is NO evidence that mutations are the source of healthy alleles, some flukes where their errors manage to do something useful, but very rare flukes.
... In that case the creature would simply find the appropriate food or other accommodation in the environment and adapt simply by using the characteristic it already has for the task it's best suited for ...
Which is the same in the case of mutations, the only difference is that mutated alleles have the potential to be beneficial in ecologies that the old ones have less advantage in.
That is purely an article of faith. There is no reason whatever that "old" alleles in new combinations can't bring out new beaks or other features. And really, somebody should discuss the logistics of adding a mutation to the collection of alleles. It has to be beneficial, it has to show up in the reproductive system where it can be passed on, multiple copies of it have to be distributed for it to become expressed in the phenotype etc. Those that do get distributed in the population tend to be disease factors. Wonderful. Meanwhile the existing alleles are already in the system and have useful functions.
The black pocket mice for example - being black by mutation they could then take advantage of the lava beds where black was beneficial compared to tan.
That's the only example anyone can come up with. Raises some questions about how mutations manage to show up for the occasion.
... One thing that makes me think this is that even on different islands the environments aren't different enough to force a genetic change. ...
In this you would be wrong. The ecologies of the different Galapagos islands varies from lush to arid (wiki):
quote:
The islands are famed for their vast number of endemic species and were studied by Charles Darwin during the voyage of the Beagle. ...
Weather changes as altitude increases in the large islands. Temperature decreases gradually with altitude, while precipitation increases due to the condensation of moisture in clouds on the slopes. There is a large range in precipitation from one place to another, not only with altitude, but also depending on the location of the islands, and also with the seasons.
On the larger islands, the pattern of generally wet highlands and drier lowlands impacts the flora. The vegetation in the highlands tends to be green and lush, with tropical woodland in places. The lowland areas tend to have arid and semi-arid vegetation, with many thorny shrubs and cacti, and almost bare volcanic rock elsewhere.
The differences between islands has caused the tortoises, finches and other species (plant and animal) to evolve in different ways,
A general statement won't do it. You need specifics. Such variations don't preclude there being enough range of possibilities for the different traits brought out by different allele frequencies to find a niche.
... Some change over generations probably as the subspecies continues to prefer its food or other qualities of its niche, but all toward elaborating the main characteristic that was already brought out by the new alleles frequencies due only to the population split.
Well that is basically how selection and adaptation works - organisms evolve to take advantage of the opportunities provided by their traits and their ecology, and different populations in different ecologies become differentiated by different adaptations. But there is not much variation available from just inherited alleles, so without new alleles from mutations there would be a coalescing of genotype\phenotype into a stasis population rather rapidly (a generation or two) on an isolated island with a small population.
Pure theory, no evidence. There's LOTS of variation available from the many alleles for the many genes that govern different traits.
In most cases there would already be enough variability for a great range of changes and adaptations in any of the small populations we've been talking about. Mutation is hardly ever needed for adaptations. ...
Your claim, no evidence that this is the case.
Yes, against YOUR claim that also has no evidence but is nothing but an endless restatement of the theory.
The smaller the population the smaller the gene pool of possible variations on alleles you can have, and the more you need mutations to have variation. Your hypothesis seems to run into itself: first you claim a small population reduces the available alleles dramatically and this brings out rare alleles to cause differentiation, then you claim there is enough allele variation "for a great range of changes" ... which requires a lot of alleles. Or mutations.
Great range in the larger population, enough to get for instance many separate populations of finches with different beaks. Eventually if they kept on losing alleles in various selection processes they'd run out of diversity, but if they've found their niche they can just stay there, further change not being needed.
The proof of all this really is the fact that when diversity IS depleted there is NOTHING that comes along to recover it. Where are your otherwise so plentiful mutations then? And on a desert island you aren't going to get migration to save the day either.
... And again I go back to the situations where a handy mutation or set of mutations would save a genetically endangered species like the cheetah and it simply doesn't happen ...
Except that mutation does not occur on demand or in response to any need of any organism. You really should know this by now, with the hundreds of times you must have been told by now.
Oh I know it, but I wonder about the evo people who so often talk as if mutation just shows up as needed and yet there is the cheetah and other endangered species to prove all that optimism wrong. Supposedly it may already be in circulation disguised as just another allele, but how would you know it WASN'T just another allele? Mutation is ASSUMED, not proved.
However, when species do recover from the brink of extinction, it is not through the loss of alleles -- that is what took them to the brink -- but through new random mutations that happened to provide a benefit. In other words, species that have recovered disprove your hypothesis. So rather than species on the endangered list (of which the Cheetah is an extreme example) we should be looking at species that have recovered from being endangered:
Humpback Whales No Longer Endangered - Nature
'Teddy bear' no longer endangered
Gray Wolf no longer endangered? - American News
First Fish That’s No Longer Endangered: Freshwater Species of the Week
and of course we have the History of the Bald Eagle
Excuse me, but those creatures recovered by growing their population when factors endangering them were removed. The elephant seal also has recovered in that sense, despite its genetic impoverishment. Without being given the information about their genetic situation, however, there's no way to say if any on that list also have a healthy enough genome to have recovered genetically as well as in numbers, but population growth doesn't by itself prove anything about their genetic health.
You are ASSUMING recovery involving mutation, you've offered no evidence of it.
... and yet this idea that mutation is the source of new genetic material to widen a creature's range of possibilities is always included in these scenarios, clung to as if it were reality.
So tell me Faith, how did species that were endangered due to low numbers of alleles available to the breeding population -- your end scenario for species due to continual loss of alleles as they form species and subspecies and varieties ... -- how do they recover?
Where does the genetic material, the alleles, come from to enable a species to recover?
They don't recover from genetic depletion, RAZD, they don't. If they remain healthy enough nevertheless they may recover population, but not genetic diversity.
In the ideal world originally created there would never have been any danger, just endless variations of beautiful living things, but this world is shot through with disease and death and if you want to save living things you have to keep them from becoming genetically impoverished.
But the processes I'm talking about I assume would have operated in the original world too, taking creatures out along interesting lines of variation until they run out of variability, but not being threatened by any of that. In THIS world, however, they are threatened, but the point of my argument is that it proves there is a built-in limitation to variation of each Kind and that macroevolution is impossible. The only argument against it really is all those phantom mutations the ToE conjures up.

This message is a reply to:
 Message 946 by RAZD, posted 06-16-2015 9:08 AM RAZD has replied

Replies to this message:
 Message 956 by NoNukes, posted 06-16-2015 11:17 AM Faith has replied
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 Message 962 by NosyNed, posted 06-16-2015 5:30 PM Faith has replied
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Faith 
Suspended Member (Idle past 1471 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 957 of 1034 (759952)
06-16-2015 11:36 AM
Reply to: Message 956 by NoNukes
06-16-2015 11:17 AM


Re: recovery
You'

This message is a reply to:
 Message 956 by NoNukes, posted 06-16-2015 11:17 AM NoNukes has not replied

  
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