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Author Topic:   Life! What a concept!
molbiogirl
Member (Idle past 2660 days)
Posts: 1909
From: MO
Joined: 06-06-2007


Message 1 of 44 (448707)
01-14-2008 9:49 PM


I'm having so much fun reading this free book from Edge.org, I want to share the link with everyone.
Page not found | Edge.org
From the site:
This year's Annual Edge Event took place at Eastover Farm in Bethlehem, CT on Monday, August 27th. Invited to address the topic "Life: What a Concept!" were Freeman Dyson, J. Craig Venter, George Church, Robert Shapiro, Dimitar Sasselov, and Seth Lloyd, who focused on their new, and in more than a few cases, startling research, and/or ideas in the biological sciences.
A small group of journalists interested in the kind of issues that are explored on Edge were present: Corey Powell, Discover, Jordan Mejias, Frankfurter Allgemeine Zeitung, Heidi Ledford, Nature, Greg Huang, New Scientist, Deborah Treisman, New Yorker, Edward Rothstein, New York Times, Andrian Kreye, Sddeutsche Zeitung, Antonio Regalado, Wall Street Journal. Guests included Heather Kowalski, The J. Craig Venter Institute, Ting Wu, The Wu Lab, Harvard Medical School, and the artist Stephanie Rudloe. Attending for Edge: Katinka Matson, Russell Weinberger, Max Brockman, and Karla Taylor.
We are witnessing a point in which the empirical has intersected with the epistemological: everything becomes new, everything is up for grabs. Big questions are being asked, questions that affect the lives of everyone on the planet. And don't even try to talk about religion: the gods are gone.
Following the theme of new technologies=new perceptions, I asked the speakers to take a third culture slant in the proceedings and explore not only the science but the potential for changes in the intellectual landscape as well.
We are pleased to present the transcripts of the talks and conversation along with streaming video clips (links below).
RAZD, I think you will love this book. And it's an easy read.

Replies to this message:
 Message 2 by nwr, posted 01-14-2008 10:42 PM molbiogirl has replied
 Message 42 by nwr, posted 01-16-2008 8:53 PM molbiogirl has replied

  
nwr
Member
Posts: 6409
From: Geneva, Illinois
Joined: 08-08-2005
Member Rating: 5.3


Message 2 of 44 (448711)
01-14-2008 10:42 PM
Reply to: Message 1 by molbiogirl
01-14-2008 9:49 PM


It's always fun ...
... to see a bunch of famous people off on a wild goose chase.

Let's end the political smears

This message is a reply to:
 Message 1 by molbiogirl, posted 01-14-2008 9:49 PM molbiogirl has replied

Replies to this message:
 Message 3 by molbiogirl, posted 01-15-2008 12:21 AM nwr has replied

  
molbiogirl
Member (Idle past 2660 days)
Posts: 1909
From: MO
Joined: 06-06-2007


Message 3 of 44 (448721)
01-15-2008 12:21 AM
Reply to: Message 2 by nwr
01-14-2008 10:42 PM


Re: It's always fun ...
This doesn't sound like a wild goose chase to me.
We want to be able to mirror image PCR, polymerase chain reaction, where you can amplify up DNA with a mirror-image polymerase. A post-doc has gone through a prototype polymerase which is for a medium size ” 353 amino acids long ” and he's made all but four of the peptide bonds now. So we're very close to getting that first polymerase.
But the goal then so we can make mirror image DNA is to make mirror image proteins, and there we have to make all of the ribosome from scratch, and so we wouldn't make all the ribosome just for fun, but this is something that we think is useful. And that's about 25 times more bonds to be made than just making the DNA polymerase. But, as Craig will greatly attest, scaling up by a factor of 25 is not that big a deal. In the genome project we went basically a hundred thousand fold scale-up from where we were at the time we started. And now we're talking about doing many many genomes. I think we will be able to make a mirror image DNA polymerase and ribosome, in which case you can start programming it straight from the computer. Once you have it all you can start making mirror-image proteins.

This message is a reply to:
 Message 2 by nwr, posted 01-14-2008 10:42 PM nwr has replied

Replies to this message:
 Message 4 by nwr, posted 01-15-2008 12:34 AM molbiogirl has replied

  
nwr
Member
Posts: 6409
From: Geneva, Illinois
Joined: 08-08-2005
Member Rating: 5.3


Message 4 of 44 (448724)
01-15-2008 12:34 AM
Reply to: Message 3 by molbiogirl
01-15-2008 12:21 AM


Re: It's always fun ...
Freeman Dyson said "We're all equally ignorant, as far as I can see. That's why somebody like me can pretend to be an expert." That's an example of what makes it sound like a wild goose chase.
And then your OP include this quote: "We are witnessing a point in which the empirical has intersected with the epistemological". Since epistemology is way off track (IMO), I don't find that encouraging.
As for your quote in Message 3, I'm not an expert in biology. But it sounds more like wishful thinking than anything else. I'm reminded of Turing's 1950 prediction that successful AI was just around the corner.

Let's end the political smears

This message is a reply to:
 Message 3 by molbiogirl, posted 01-15-2008 12:21 AM molbiogirl has replied

Replies to this message:
 Message 5 by molbiogirl, posted 01-15-2008 12:48 AM nwr has replied

  
molbiogirl
Member (Idle past 2660 days)
Posts: 1909
From: MO
Joined: 06-06-2007


Message 5 of 44 (448726)
01-15-2008 12:48 AM
Reply to: Message 4 by nwr
01-15-2008 12:34 AM


Re: It's always fun ...
I'm no Freeman Dyson fan.
And then your OP include this quote: "We are witnessing a point in which the empirical has intersected with the epistemological". Since epistemology is way off track (IMO), I don't find that encouraging.
Since when is a hyperbolic blurb evidence that that book is a wild goose chase?
I'm reminded of Turing's 1950 prediction that successful AI was just around the corner.
For every scientist you name who overestimates technological progress, I can name a scientist who underestimated the progress of the technology.
So far, genomic technologies are following Moore's Law.

This message is a reply to:
 Message 4 by nwr, posted 01-15-2008 12:34 AM nwr has replied

Replies to this message:
 Message 6 by nwr, posted 01-15-2008 1:00 AM molbiogirl has replied

  
nwr
Member
Posts: 6409
From: Geneva, Illinois
Joined: 08-08-2005
Member Rating: 5.3


Message 6 of 44 (448730)
01-15-2008 1:00 AM
Reply to: Message 5 by molbiogirl
01-15-2008 12:48 AM


Re: It's always fun ...
It's not a question of Moore's law.
Turing believed that thought was logic, and thus could be digitally implemented. I believe that to be a faulty assumption.
In this discussion there appears to be an assumption that life is digital. I likewise believe that to be a faulty assumption.

Let's end the political smears

This message is a reply to:
 Message 5 by molbiogirl, posted 01-15-2008 12:48 AM molbiogirl has replied

Replies to this message:
 Message 7 by molbiogirl, posted 01-15-2008 1:13 AM nwr has replied
 Message 16 by Fosdick, posted 01-15-2008 11:29 AM nwr has replied

  
molbiogirl
Member (Idle past 2660 days)
Posts: 1909
From: MO
Joined: 06-06-2007


Message 7 of 44 (448731)
01-15-2008 1:13 AM
Reply to: Message 6 by nwr
01-15-2008 1:00 AM


Re: It's always fun ...
In this discussion there appears to be an assumption that life is digital. I likewise believe that to be a faulty assumption.
Seth Lloyd.
And if you define life as "the genome", which Seth does, then life most certainly is digital.
It's been known since the structure of DNA was elucidated that DNA is very digital. There are four possible base pairs per site, two bits per site, three and a half billion sites, seven billion bits of information in the human DNA.
You don't seem to have read the .pdf.
You seem to be jumping to conclusions.

This message is a reply to:
 Message 6 by nwr, posted 01-15-2008 1:00 AM nwr has replied

Replies to this message:
 Message 8 by New Cat's Eye, posted 01-15-2008 1:42 AM molbiogirl has replied
 Message 9 by nwr, posted 01-15-2008 1:59 AM molbiogirl has replied

  
New Cat's Eye
Inactive Member


Message 8 of 44 (448740)
01-15-2008 1:42 AM
Reply to: Message 7 by molbiogirl
01-15-2008 1:13 AM


Re: It's always fun ...
And if you define life as "the genome", which Seth does, then life most certainly is digital.
Oh shit. Don't let Hoot Mon find out....
WRT the removal of God(s):
Can't this be another case of HOW god did it, rather than him not being a part at all?

This message is a reply to:
 Message 7 by molbiogirl, posted 01-15-2008 1:13 AM molbiogirl has replied

Replies to this message:
 Message 11 by molbiogirl, posted 01-15-2008 2:08 AM New Cat's Eye has replied
 Message 15 by Fosdick, posted 01-15-2008 11:12 AM New Cat's Eye has not replied

  
nwr
Member
Posts: 6409
From: Geneva, Illinois
Joined: 08-08-2005
Member Rating: 5.3


Message 9 of 44 (448742)
01-15-2008 1:59 AM
Reply to: Message 7 by molbiogirl
01-15-2008 1:13 AM


Re: It's always fun ...
And if you define life as "the genome", which Seth does, then life most certainly is digital.
I don't define life as the genome. I don't define thought/intelligence as logic. I suspect that we are seeing two different versions of the same mistake.
Life generates intelligence/thought. If life is digital, it would follow that intelligence is digital. Since I am quite certain that intelligence is not digital, it would seem to follow that life also is not digital.
You don't seem to have read the .pdf.
I'll grant that I have not yet finished it.
You seem to be jumping to conclusions.
As long as they are the right conclusions, then no harm done

Let's end the political smears

This message is a reply to:
 Message 7 by molbiogirl, posted 01-15-2008 1:13 AM molbiogirl has replied

Replies to this message:
 Message 10 by molbiogirl, posted 01-15-2008 2:07 AM nwr has replied

  
molbiogirl
Member (Idle past 2660 days)
Posts: 1909
From: MO
Joined: 06-06-2007


Message 10 of 44 (448745)
01-15-2008 2:07 AM
Reply to: Message 9 by nwr
01-15-2008 1:59 AM


Re: It's always fun ...
I don't define life as the genome. I don't define thought/intelligence as logic. I suspect that we are seeing two different versions of the same mistake.
You missed the point.
Here's the full quote:
Quantum mechanics means that there are only a discrete number of species of chemicals. You can only put together two hydrogens and an oxygen to make a molecule in one way that I know of. This means that we can catalog chemicals in a discrete list ” chemical number one, chemical number two, chemical number three ” you can order it any way you want according to your favorite chemicals. But it's discrete. This digital nature of the universe actually infects everything, in particular life. It's been known since the structure of DNA was elucidated that DNA is very digital. There are four possible base pairs per site, two bits per site, three and a half billion sites, seven billion bits of information in the human DNA. There's a very recognizable digital code of the kind that electrical engineers rediscovered in the 1950s that maps the codes for sequences of DNA onto expressions of proteins. There's a digital nature to the universe, and quantum mechanics makes this happen.
In fact, having read Seth's entire contribution to this conversation, at no point does he define life.
He talks about the quantum nature of the universe and how it leads to complexity.
As long as they are the right conclusions, then no harm done.
But you didn't come to the right conclusion.

This message is a reply to:
 Message 9 by nwr, posted 01-15-2008 1:59 AM nwr has replied

Replies to this message:
 Message 14 by nwr, posted 01-15-2008 8:42 AM molbiogirl has replied

  
molbiogirl
Member (Idle past 2660 days)
Posts: 1909
From: MO
Joined: 06-06-2007


Message 11 of 44 (448746)
01-15-2008 2:08 AM
Reply to: Message 8 by New Cat's Eye
01-15-2008 1:42 AM


Re: It's always fun ...
CS, let's try to stick to the book. There's nothing about a god in the book.

This message is a reply to:
 Message 8 by New Cat's Eye, posted 01-15-2008 1:42 AM New Cat's Eye has replied

Replies to this message:
 Message 12 by New Cat's Eye, posted 01-15-2008 2:12 AM molbiogirl has not replied

  
New Cat's Eye
Inactive Member


Message 12 of 44 (448749)
01-15-2008 2:12 AM
Reply to: Message 11 by molbiogirl
01-15-2008 2:08 AM


Re: It's always fun ...
CS, let's try to stick to the book. There's nothing about a god in the book.
That's fine. I'll happily bow out. I just saw this from the OP:
quote:
And don't even try to talk about religion: the gods are gone.

This message is a reply to:
 Message 11 by molbiogirl, posted 01-15-2008 2:08 AM molbiogirl has not replied

  
Am5n 
Suspended Member (Idle past 5921 days)
Posts: 106
From: New York City, New York, United States
Joined: 02-21-2007


Message 13 of 44 (448763)
01-15-2008 5:00 AM


Wow... another bunch of famous people off on a wild goose chase. this should be interesting... maybe.. I think...
sincerely yours, Amen.

  
nwr
Member
Posts: 6409
From: Geneva, Illinois
Joined: 08-08-2005
Member Rating: 5.3


Message 14 of 44 (448779)
01-15-2008 8:42 AM
Reply to: Message 10 by molbiogirl
01-15-2008 2:07 AM


Re: It's always fun ...
In fact, having read Seth's entire contribution to this conversation, at no point does he define life.
That omission is telling us something

Let's end the political smears

This message is a reply to:
 Message 10 by molbiogirl, posted 01-15-2008 2:07 AM molbiogirl has replied

Replies to this message:
 Message 20 by molbiogirl, posted 01-15-2008 2:46 PM nwr has seen this message but not replied

  
Fosdick 
Suspended Member (Idle past 5519 days)
Posts: 1793
From: Upper Slobovia
Joined: 12-11-2006


Message 15 of 44 (448818)
01-15-2008 11:12 AM
Reply to: Message 8 by New Cat's Eye
01-15-2008 1:42 AM


Old news
CS writes:
And if you define life as "the genome", which Seth does, then life most certainly is digital.
Oh shit. Don't let Hoot Mon find out....
Old news. Only the chemo-heads should be surprised.
”HM

This message is a reply to:
 Message 8 by New Cat's Eye, posted 01-15-2008 1:42 AM New Cat's Eye has not replied

  
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