1. How do you explain such an intricate complex programming system?
Descent with modification from less 'intricate' systems.
After all, the basic invertebrate 'heart' is a simple muscular tube which moves blood-like liquid by peristaltic contraction. Muscle sections working in a timed, sequenced, manner.
The fish heart with its two chambers may seem more complex, but it's still effectively a muscular tube with one part contracting followed (offset in time) by the next part contracting. The change of architecture doesn't seem to have required very much change in the 'programming'.
2. If you do not consider this mechanism to be'programmed by someone', why not?
First, because it doesn't seem at all necessary.
Second, because I've seen no evidence as to how/where/when such a 'someone' COULD have accomplished such a thing. Before considering such 'programming' by a 'someone' as the probable explanation, I would want some indication that such 'programming' by a 'someone' is at all possible, at least in principle.