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Author Topic:   Does Neo-Darwinian evolution require change ?
Dr Adequate
Member (Idle past 311 days)
Posts: 16113
Joined: 07-20-2006


Message 5 of 114 (600722)
01-16-2011 5:35 PM
Reply to: Message 1 by slevesque
01-16-2011 4:49 PM


I used to think this was possible, but lately I have been questioning this. Now I understand we can imagine a scenario where not only the selective pressures don't change, but where the mutations flies back and forth (either through selection or genetic drift) between the same mutations, always reverting back to what it was before.
But can such a situation happen in reality ?
Something like what you're describing has been observed in "Darwin's finches", where the average phenotype tracks the climate. But this does not (common sense would suggest) involve the alternate fixation of new mutations, just a shift in the frequency of existing alleles.
Something more like what you're talking about can be seen in antibiotic-dependent bacteria. I understand that if you take their antibiotics away, it is usually (but not invariably) the case that some bacterium will revert to being merely tolerant of the antibiotic, resulting in the survival of the population. In this case we are talking about mutations becoming fixed, and obviously this could happen several times in a row if you kept on jerking the bacteria around.
Of course there's no particular reason why anything which at the same time is fixed by drift should also revert, so the whole genotype needn't get back to exactly where you started.
---
Now if some things are disputed and/or unclear (which I'm sure some are) go ahead and ask a clarification or tell me what is wrong. Just make sure that the point you are raising hasn't already being raised.
I'm not sure where this is going.

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 Message 1 by slevesque, posted 01-16-2011 4:49 PM slevesque has replied

Replies to this message:
 Message 7 by slevesque, posted 01-16-2011 8:05 PM Dr Adequate has replied

  
Dr Adequate
Member (Idle past 311 days)
Posts: 16113
Joined: 07-20-2006


Message 16 of 114 (600780)
01-17-2011 9:19 AM
Reply to: Message 7 by slevesque
01-16-2011 8:05 PM


This is what I'm asking: given what we know of genetics, and what we know of selection, if we observe any given species (even in an unchanging environment), will we automatically observe macro-evolution if we stay long enough (except in maybe some very statistical rare cases)
PS I never liked the terms macro and micro evolution.
Me neither.
The question you pose is an interesting one. How much evolution would we see in an old species in a perfectly stable environment?
well, adaptive evolution would stop, and genetic drift will go on happening. Now it should be pointed out that a variation which is neutral is not necessarily without consequences.
When we use Darwinian algorithms to solve a problem, the solution goes to a local optimum (which we hope will be the global optimum) and stays there. this would suggest on the face of it that this is what would happen in real life. But in such algorithms the characters on which the program is operating are usually relevant ones. If we're trying to produce a design for the acoustics of a concert hall (to take an example at random) then what we're evolving is the shape. If we made the color one of the characters evolving, then being irrelevant to the fitness of the solution, it would vary at random.
Now, the existence of cryptic sibling species sharing the same environment shows that such variations can produce speciation. In a way this is interesting, and in a way it isn't.
What about variations which have a visible effect on the phenotype? That's more tricky to think about. Are there, in fact, variations which would be both obvious and selectively neutral?
It has been suggested that we can see this in ammonites. The shape of their shells can be more or less smooth or ribbed or bumpy, and certainly varies over time which is why they make such nice index fossils. and yet there doesn't seem to be a pattern or direction to the variation.
It could be, however, that we are ignorant of the underlying causes. We might speculate that this is a form of Red-Queen's-Race style adaptation which we could understand if we correlated it with the shape of the teeth of their major predators. Or perhaps it is a side-effect of some adaptive change. Maybe they were changing their biochemistry to try to get one step ahead of some bacterial parasite, and this just happened to change their external form as an incidental consequence.
It brings up two issues. First, living fossils, where a species appears in the fossil record millions of years ago, dissapears, and is found alive and almost identical today.
Such a group is more accurately described as a Lazarus taxon, and they're usually not "almost identical" after a long period of time.
Second, one of the two great trends in the fossil record, according to Gould, is stasis (the other being the sudden appearance of new species).
This is what we would expect. Once a species has evolved to fit its environment, there's no selective pressure any more, and if the sort of visible morphological neutral drift I've been discussing doesn't happen, then stasis is what we would get.
Edited by Dr Adequate, : No reason given.

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 Message 20 by slevesque, posted 01-17-2011 2:41 PM Dr Adequate has replied

  
Dr Adequate
Member (Idle past 311 days)
Posts: 16113
Joined: 07-20-2006


Message 28 of 114 (600946)
01-17-2011 9:11 PM
Reply to: Message 20 by slevesque
01-17-2011 2:41 PM


The I guess I could formulate it this way: Given the high mutation rates, how can morphological drift NOT happen ?
Well, perhaps sometimes it does.
But in the first place it would have to be neutral to avoid selection, and in the second place, how many morphological mutations do you see?

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Dr Adequate
Member (Idle past 311 days)
Posts: 16113
Joined: 07-20-2006


Message 29 of 114 (600947)
01-17-2011 9:14 PM
Reply to: Message 26 by slevesque
01-17-2011 7:42 PM


Re: Eldredge & Gould -- stasis is stasis because ...
I understand all these, but I don't see how it answers what I'm asking. Which is that given the high mutation rates, how can it stay at that optimal peak when every single offspring will have inherited so many mutation (the majority deleterious, most only very slightly). Whichever one natural selection ''chooses'', it will still be less fit then it's parents were.
As I said, any mutation rate over 1pipg seems to be forcing the population from the optimal peak, with natural selection slowing down the drift but unable to stop it. In fact I have difficulty imagining how any species could sustain the mutational burdain of such high rates.
Since this is contrary to observation, the sensible conclusion is that you are overestimating the frequency of deleterious mutations.

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Dr Adequate
Member (Idle past 311 days)
Posts: 16113
Joined: 07-20-2006


Message 30 of 114 (600980)
01-18-2011 12:49 AM
Reply to: Message 1 by slevesque
01-16-2011 4:49 PM


Cost of selection obviously limits natural selection from ever keeping up with all these new mutations.
Hold on a minute.
Cost of selection usually refers to the wastage involved in getting a beneficial mutation from one in the population to fixation --- that is, the cost of adaptive selection.
The cost of getting a deleterious mutation from one in the population to zero is obviously much lower. Conservative selection is easy.
Cost of selection as the phrase is usually used has nothing to do how hard it is to maintain stasis. Now if you want to use the phrase in a broader sense, and will stipulate as much, then that's fine --- but in that case it is no longer "obvious" that cost of selection places any stringent limit on what natural selection can do.
Edited by Dr Adequate, : No reason given.
Edited by Dr Adequate, : No reason given.

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Replies to this message:
 Message 41 by slevesque, posted 01-18-2011 3:43 PM Dr Adequate has replied

  
Dr Adequate
Member (Idle past 311 days)
Posts: 16113
Joined: 07-20-2006


Message 39 of 114 (601049)
01-18-2011 12:52 PM
Reply to: Message 1 by slevesque
01-16-2011 4:49 PM


Advice For Slevesque
So learn some imperative programming language such as C or Pascal and then you can do it yourself. You can take a set of assumptions about evolution and see how they work out. I can do that and set the program to find out what happens on average in 10000 cases over 10000 generations and get a result back while I'm slicing up the vegetables for dinner. Computers are really quite fast nowadays.
Do it yourself. See what happens.
I have.

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Dr Adequate
Member (Idle past 311 days)
Posts: 16113
Joined: 07-20-2006


Message 62 of 114 (601140)
01-18-2011 10:19 PM
Reply to: Message 41 by slevesque
01-18-2011 3:43 PM


Cost of selection puts a limit on what natural selection can do because it tells us that selection has a cost, you cannot select Ad Infinitum. If, in a given species in a given generation, 5000 individuals can be killed by selection and still maintain the population size stable, then that is the maximum ''cost'' you can pay in that generation to filter the deleterious mutations.
But that is not the limit of purifying selection. The minimum genetic casualties required to remove a new deleterious mutation from the gene pool is one (1) (ONE). Which keeps the population stable at least with respect to that particular mutation.

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Replies to this message:
 Message 74 by slevesque, posted 01-19-2011 3:57 PM Dr Adequate has replied

  
Dr Adequate
Member (Idle past 311 days)
Posts: 16113
Joined: 07-20-2006


Message 80 of 114 (601340)
01-19-2011 10:13 PM
Reply to: Message 74 by slevesque
01-19-2011 3:57 PM


Of course, and the most deletirious mutations will be wiped out of each generation without any problem.
But some individuals most survive and reproduce, and what I'm sayign is that the high mutation rates imply that those individuals will have inherited lots of mutations, and although they may have the least deleterious set of mutations to have appeared in that generation, doesn't mean they still don't have those mutations.
So we'll get neutral drift, which is technically evolution but not in the interesting sense of the word, and which needn't show up in the fossil record.

This message is a reply to:
 Message 74 by slevesque, posted 01-19-2011 3:57 PM slevesque has replied

Replies to this message:
 Message 85 by slevesque, posted 01-20-2011 1:32 AM Dr Adequate has replied

  
Dr Adequate
Member (Idle past 311 days)
Posts: 16113
Joined: 07-20-2006


Message 93 of 114 (601430)
01-20-2011 12:26 PM
Reply to: Message 85 by slevesque
01-20-2011 1:32 AM


Kimura's ''neutral evolution'' only works if the vast majority of the genome has no function. Even if only 5% of it were functional, a mutation rate of 40mpipg would result in two mutations falling into the functional part of it.
Which can still be neutral.
And all that I have said would still hold.
As would all I've said on the subject, especially the things I said about purifying selection.

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 Message 85 by slevesque, posted 01-20-2011 1:32 AM slevesque has not replied

  
Dr Adequate
Member (Idle past 311 days)
Posts: 16113
Joined: 07-20-2006


Message 94 of 114 (601431)
01-20-2011 12:29 PM
Reply to: Message 84 by slevesque
01-20-2011 1:27 AM


Re: The Dance of the Population Curves
The most conservative estimate of the deleterious-to-beneficial ratio of mutations was 50 to 1. I've seen some suggest perhaps as high as a million to 1.
Where were these figures pulled from?
But even with the 50-1 ratio, it's still pretty obvious that the high mutations rates will push the next generation farther away from the peak then their parents from the optimal peak.
It is far from obvious, and indeed there will always be a population size above which it is false.
And this, perhaps, explains why what you think should happen in principle is the opposite of what we observe happening in practice.

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Dr Adequate
Member (Idle past 311 days)
Posts: 16113
Joined: 07-20-2006


Message 101 of 114 (608357)
03-09-2011 9:41 PM
Reply to: Message 100 by shadow71
03-09-2011 7:45 PM


Re: Mutation rates
Is it agreed in the scientific biological community that Mattick is correct about "junk DNA" and their effect on the conrol of human development and brain function?
No.
Some of what you quote isn't even English. Look at it. "Most genetic information is transacted by proteins". Does that have a meaning? OK, what about: "The extent of non-protein-coding DNA, traditionally thought to be junk, increases with increasing complexity"? These are all English words, and yet if you put them together in that order they do not convey anything, true or false.
If this is a fair sample of Mattick's ideas, then he doesn't have any ideas --- good or bad. His writing is, in the words of Wolfgang Pauli, "not even wrong".

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Dr Adequate
Member (Idle past 311 days)
Posts: 16113
Joined: 07-20-2006


Message 105 of 114 (608407)
03-10-2011 5:39 AM
Reply to: Message 104 by Wounded King
03-10-2011 5:01 AM


Re: Mutation rates
What he mean's by "The extent of non-protein-coding DNA, traditionally thought to be junk, increases with increasing complexity" is that the proportion of the genome that is non-coding tends to increase with apparent morphological complexity.
Now that is meaningful.

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