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Author Topic:   No genetic bottleneck proves no global flood
herebedragons
Member (Idle past 879 days)
Posts: 1517
From: Michigan
Joined: 11-22-2009


Message 67 of 140 (720732)
02-27-2014 9:10 AM
Reply to: Message 66 by Faith
02-27-2014 5:44 AM


With a bottleneck you can get such depleted genetic diversity that breeding with other members of the pseices has become impossible
But changing allele frequency alone is not enough to make two sub-species reproductively incompatible.
There is only ONE process that supposedly adds new genetic material, new alleles, and that's mutation, which I don't believe does any such thing.
I hope you are going to follow my Genetic and Cellular Mechanisms and Variation thread.
HBD

Whoever calls me ignorant shares my own opinion. Sorrowfully and tacitly I recognize my ignorance, when I consider how much I lack of what my mind in its craving for knowledge is sighing for... I console myself with the consideration that this belongs to our common nature. - Francesco Petrarca
"Nothing is easier than to persuade people who want to be persuaded and already believe." - another Petrarca gem.
Ignorance is a most formidable opponent rivaled only by arrogance; but when the two join forces, one is all but invincible.

This message is a reply to:
 Message 66 by Faith, posted 02-27-2014 5:44 AM Faith has not replied

  
herebedragons
Member (Idle past 879 days)
Posts: 1517
From: Michigan
Joined: 11-22-2009


(2)
Message 124 of 140 (721227)
03-05-2014 11:14 AM
Reply to: Message 122 by Faith
03-05-2014 9:32 AM


Re: Neutral, deleterious or beneficial
I'm sorry, I know I'm not getting this question asked clearly, but there's something odd about your statement, like it implies switching back and forth from DNA level observation to phenotypic observation but not making a change in the terminology with respect to fitness. Sorry, I'm tired. If you can make sense of this please answer it but I have to get some sleep.
They are trying to get across that the terms "neutral, beneficial and deleterious" refer specifically to the effect a mutation has on the organism's fitness, ie. it's ability to reproduce. It does not refer to any particular change in DNA or protein or phenotype, but only the effect on the organism.
However, I would suspect that any mutation that has an effect on phenotype would be either beneficial or deleterious and not neutral. The beneficial or deleterious effect may be so inconsequential so as to call it neutral, but none-the-less I think there would be some effect. But still, neutral doesn't mean that it has no effect on phenotype - it means it has no effect on fitness.
Also keep in mind that phenotype doesn't just mean something you can see, it may also be a biochemical process that you have no idea has changed just by observing the organism.
The other major point is that you really can't use terms like beneficial, deleterious or neutral without context of the environment. Thus a change can be beneficial in one environment and deleterious in another. It's about the context of fitness, how is the organism's ability to reproduce affected?
HBD

Whoever calls me ignorant shares my own opinion. Sorrowfully and tacitly I recognize my ignorance, when I consider how much I lack of what my mind in its craving for knowledge is sighing for... I console myself with the consideration that this belongs to our common nature. - Francesco Petrarca
"Nothing is easier than to persuade people who want to be persuaded and already believe." - another Petrarca gem.
Ignorance is a most formidable opponent rivaled only by arrogance; but when the two join forces, one is all but invincible.

This message is a reply to:
 Message 122 by Faith, posted 03-05-2014 9:32 AM Faith has not replied

  
herebedragons
Member (Idle past 879 days)
Posts: 1517
From: Michigan
Joined: 11-22-2009


(1)
Message 125 of 140 (721228)
03-05-2014 11:41 AM
Reply to: Message 119 by Faith
03-05-2014 8:58 AM


Re: Neutral, deleterious or beneficial
Again, I'd like to know what term I could use for the mutation in an allele that does not change the protein it codes for
As Jon pointed out, Silent mutation may be a better term for what you are describing.
But I think what is more confused is that you wouldn't refer to a mutation in an allele unless you were talking about something that changed the function of that allele. Additionally, there are more ways to change function besides changing the protein. What if the mutation was in a promoter region so that the gene produced twice as much gene product, but the protein itself does not change? This could very well be the case in mice having darker fur (I don't know that it is but this is a common situation). Melanin or whatever pigment is in their fur) could be produced at two or three times the rate as in tan mice and produce darker fur. No change in protein - just more of it. Would this be a different allele? Yes, without even changing the protein.
I'd also appreciate very much knowing if I'm correct that this is the most common kind of mutation.
More specifically you are asking about mutations to the gene. Yes, most mutations occur in non-coding regions where they are invisible to selection, ie. neutral.
HBD
Edited by herebedragons, : might not be melanin in the fur - but probably is

Whoever calls me ignorant shares my own opinion. Sorrowfully and tacitly I recognize my ignorance, when I consider how much I lack of what my mind in its craving for knowledge is sighing for... I console myself with the consideration that this belongs to our common nature. - Francesco Petrarca
"Nothing is easier than to persuade people who want to be persuaded and already believe." - another Petrarca gem.
Ignorance is a most formidable opponent rivaled only by arrogance; but when the two join forces, one is all but invincible.

This message is a reply to:
 Message 119 by Faith, posted 03-05-2014 8:58 AM Faith has not replied

  
herebedragons
Member (Idle past 879 days)
Posts: 1517
From: Michigan
Joined: 11-22-2009


Message 130 of 140 (732476)
07-07-2014 7:11 PM
Reply to: Message 128 by CreationPigeon
07-07-2014 6:41 PM


Hi, and welcome CreationPigeon
Aquatic life, insects, amphibians and small, semi-aquatic animals such as otters and monitor lizards would not need to be on the ark as they could survive either in the flood waters or on floating vegetation mats.
First problem is that the Bible says that all living creatures were killed by the flood except those that were on the ark. Now, one could argue what "alive" means.
Gen 6:7 says
quote:
I will blot out man whom I have created from the face of the land, from man to animals to creeping things and to birds of the sky;
Gen 7:21 - 23 says:
quote:
All flesh that moved on the earth perished, birds and cattle and beasts and every swarming thing that swarms upon the earth, and all mankind; of all that was on the dry land, all in whose nostrils was the breath of the spirit of life, died. Thus He blotted out every living thing that was upon the face of the land, from man to animals to creeping things and to birds of the sky, and they were blotted out from the earth; and only Noah was left, together with those that were with him in the ark.
So maybe plants, fish and insets are not included in this list, but its hard to justify that "amphibians and small, semi-aquatic animals such as otters and monitor lizards " were not destroyed by the flood.
Second problem depends on what kind of flood it was. Some YECs believe that the flood was so catastrophic that it stripped the land bare and laid all that sediment back down in layers miles thick. It is kind of hard to imagine that anything, fish, plants, insects - anything, could survive such a catastrophic event.
Now if you imagine a gentle, semi-lethal event, well then it may be possible for some creatures that weren't listed as being killed to survive. However, now we will have trouble explaining geological features in a YEC time frame.
HBD
Note: use the peek button at the bottom of the frame to see how quote boxes are formatted. For other formatting issues you can click on dBCodes
Edited by herebedragons, : No reason given.

Whoever calls me ignorant shares my own opinion. Sorrowfully and tacitly I recognize my ignorance, when I consider how much I lack of what my mind in its craving for knowledge is sighing for... I console myself with the consideration that this belongs to our common nature. - Francesco Petrarca
"Nothing is easier than to persuade people who want to be persuaded and already believe." - another Petrarca gem.
Ignorance is a most formidable opponent rivaled only by arrogance; but when the two join forces, one is all but invincible.

This message is a reply to:
 Message 128 by CreationPigeon, posted 07-07-2014 6:41 PM CreationPigeon has not replied

Replies to this message:
 Message 132 by Faith, posted 07-07-2014 7:33 PM herebedragons has replied

  
herebedragons
Member (Idle past 879 days)
Posts: 1517
From: Michigan
Joined: 11-22-2009


Message 133 of 140 (732486)
07-07-2014 8:44 PM
Reply to: Message 132 by Faith
07-07-2014 7:33 PM


I meant to say "some YECs" rather than "So ..." Anyway, it is not an uncommon argument the YECs use, that the flood laid down the strata and deposited the fossil record. I don't think I have heard anyone but you actually say that the material for the geological column came from scouring the land, but it is the only "logical" place it could have come from.
So, how could sea creatures have survived a catastrophe of the magnitude you imagine?
HBD
Edited by Adminnemooseus, : Off-topic banner.

Whoever calls me ignorant shares my own opinion. Sorrowfully and tacitly I recognize my ignorance, when I consider how much I lack of what my mind in its craving for knowledge is sighing for... I console myself with the consideration that this belongs to our common nature. - Francesco Petrarca
"Nothing is easier than to persuade people who want to be persuaded and already believe." - another Petrarca gem.
Ignorance is a most formidable opponent rivaled only by arrogance; but when the two join forces, one is all but invincible.

This message is a reply to:
 Message 132 by Faith, posted 07-07-2014 7:33 PM Faith has not replied

  
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