To me, it's common sense that if any human endeavor is undertaken involving distances of two or more differing lengths, with all things being the same other than a distance, the one with the longer distance is going to be more error prone.
Fair enough, this is reasonable.
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There is supposedly, what, one hundred billion stars in our galaxy alone? Hundreds of billions of galaxies all around ours?
About four hundred billion stars in the Milky Way, and around 200 billion galaxies in the observable universe.
If our current estimate of the number of extrasolar planets per star continue to hold for other galaxies, then that gives around 300 sectillion planets in the observable universe.
When looking from only one point, what are the chances of counts and distances and stars being directly in line with each other from our line of sight getting messed up?
Low enough to be statistically negligible when averaged over millions of stars. Space is extremely sparse. Think about it. Draw a sphere 10 light years in radius around the sun. The Sun (Sol), Alpha Centauri, Sirius, Bernard's star occupy around 0.0000016% of this volume. Hence the chance of objects being directly in line with each other is about one in fifty million. This error is swamped when one does a statistical analysis on millions of stars.
Is there not dark matter and black holes that could also give some incorrect readings, consistently, no matter how many different people take the same readings with the same equipment, from the same spot in the universe?
Not really, black holes a relatively rare, there is only one per hundred thousand stars, so again that gives you a one in five hundred billion chance that a black hole will introduce an error into a distance measurement. In fact the chance is even less, since black holes aren't luminous, the stars light would have to align almost exactly with the black hole itself, which are usually only a few kilometers in diameter.
Dark Matter is non-luminous and its only effect would be gravitational lensing, which distorts images, but wouldn't change calculations of their distance. Lensing doesn't magnify or shrink images. In either case the density of Dark Matter is too low to cause significant lensing.