There are several possible scenario.
Is it possible that there can be indoctrination?
I think everyone would concede that indoctrination is possible.
Does indoctrination happen?
I think everyone will concede that some indoctrination might happen but so far I've seen no evidence presented that supports indoctrination.
Is the scientific method designed to counteract the effects of indoctrination?
Still open to discussion.
Is there evidence that indoctrination, even if it is present, is not a major factor?
Yes, and I believe sufficient evidence has been presented to support that assertion. The simple fact that the TOE has changed with the discovery of additional information and data shows that it is not simply the result of indoctrination.
I'm sorry but this whole discussion is so similar to ID, CPT and other such practices that I cannot consider it more than some wild notion. It is but yet another case of bringing up some wild hypothesis and trying to determine is it's possible.
Aslan is not a Tame Lion