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Author Topic:   Evolution and Increased Diversity
RAZD
Member (Idle past 1423 days)
Posts: 20714
From: the other end of the sidewalk
Joined: 03-14-2004


Message 121 of 140 (440274)
12-12-2007 12:54 PM
Reply to: Message 120 by New Cat's Eye
12-12-2007 11:56 AM


some notes
To add to what you said.
What I have said is that you are confusing increased biodiversity [an increase in the number of taxa ] with population expansion [an increase in the number of individuals within the same taxon].
I guess I can see how you might think that, but I am not confusing those things.
We (I, author of the thread) are not talking only about the creation of new taxons or just "biodiversity" as narrowly (re)defined by Elmer, but about the full range of diversity within biological systems, from the spreading of a new allele within a population to the formation of varieties and subspecies (all the various "breeds" and "mongrels" of dogs for instance), to speciation and later divergence:
Biodiversity - Wikipedia
quote:
The most straightforward definition is "variation of life at all levels of biological organization".[3] A second definition holds that biodiversity is a measure of the relative diversity among organisms present in different ecosystems. "Diversity" in this definition includes diversity within a species and among species, and comparative diversity among ecosystems.
A third definition that is often used by ecologists is the "totality of genes, species, and ecosystems of a region". An advantage of this definition is that it seems to describe most circumstances and present a unified view of the traditional three levels at which biodiversity has been identified:
  • genetic diversity - diversity of genes within a species. There is a genetic variability among the populations and the individuals of the same species. (See also population genetics.)
  • species diversity - diversity among species in an ecosystem. "Biodiversity hotspots" are excellent examples of species diversity.
  • ecosystem diversity - diversity at a higher level of organization, the ecosystem. To do with the variety of ecosystems on Earth.

None of those match Elmer's narrow definition.
So basically the question boils down to: How can biodiversity increase when the selective factor can only removing unacceptable traits?
I think it would be better phrased this way:--How can biodiversity increase where the causal factor to which the increase is attributed [ns] is only capable of removing traits from the total number of presently existing biodiverse traits.
You have to have more alleles being introduced to the population, by RM, than there are being removed from the population, by NS.
There is a lot more to it than that. Selection is what mixes different variations of some traits with different variations in other traits - mixing that is not done by random mutation at all - that only occur in a single mix. (See Message 119). This mixing is what makes different phenotypes, and selection operates on phenotypes, the whole individual, not on individual mutations.
In this way selection produces novelty - novel mixes of genes once novel genes are added to the population.
Getting back to Elmer's narrow restrictive redefinition of "biodiversity," the generation of new taxons, is accomplished by speciation, which is the division of a population from one where all individuals (theoretically) were (capable of) interbreeding into two daughter populations, where all individuals (theoretically) were (capable of) interbreeding within each new population, but no longer interbreed between the two daughter populations.
That is caused by natural selection: the failure to breed is a selection process.
Subsequent diversion (additional difference) between the daughter population occurs over time as they accumulate different variations within their populations and undergo more speciation events.
To say that even this narrow restrictive (re)definition of biodiversity does not occur by increased diversity within populations.
There is no "magic mutation" that makes whole new species or kinds types of species.
Enjoy.
Edited by RAZD, : clarity
Edited by RAZD, : sp

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Elmer
Member (Idle past 5922 days)
Posts: 82
Joined: 01-15-2007


Message 122 of 140 (440323)
12-12-2007 4:11 PM
Reply to: Message 120 by New Cat's Eye
12-12-2007 11:56 AM


hi cs;
You say--
“Subtraction equals addition” (although worded poorly) when your influx is greater than your retractions.
Right away I have to stop you. Let's agree that to take the English language seriously, and not get lost in "Wonderland" with the likes of Humpty Dumpty. To be specific, in English,(and I supect any other earthly language), anything that is "greater than" something else is never "equal" to it.
Where ”influx’ is the alleles provided by RM and a ”retraction’ is selecting against an allele via NS.
Excuse me, but you seem to be forgetting that we were discussing "natural selection", not "random genetic mutation". The issue being that 'ns' can only be subtractive, never additive, and so can only decrease biodiversity, and never increase it. "Random Genetic Mutation" is NOT "Natural Selection". They are entirely different notions. You cannot 'switch hit' from one to the other as the mood strikes you. A 'retraction' is a subtraction, i.e., a decrease, and wrt to biodiversity, and that is all that (notionally) 'ns' can ever accomplish.
Now, if you want, we'll discuss the notion that biodiversity can be increased by random genetic mutations, but that is a separate issue concerning a different and quite distinct hypothetical mechanism.
quote:
What I have said is that you are confusing increased biodiversity [an increase in the number of taxa ] with population expansion [an increase in the number of individuals within the same taxon].
I guess I can see how you might think that, but I am not confusing those things.
Well, you have a right to simply gainsay the obvious and undeniable, I suppose.
You seen to agree that RM can provide the new info to select from,
That is not really true, but it is too soon to go into the complexities of what I believe. What I am saying is that darwinians of the fisherian variety, [that is, believers in what is called "random but beneficial genetic mutations"], believe that rgm can and does supply 'new information', and that that 'new information' can and does mechanically and deterministically account for increases in the amount of organismic variety in the taxa of live organisms, that is, an actual increase in actual biological diversity.
We can discuss this belief, [and my own, quite different beliefs], just as soon as you can bring yourself to concede that 'natural selection' is not 'random genetic mutation', and that although some people believe that 'random genetic mutation' can and does contribute to the increase in the number of distinguishable bioforms [separate taxa, biodiversity] in the biosphere and/or local ecosystems, you are possibly the last person alive who believes that 'natural selection' does that very same thing. Please admit your mistake, drop your futile gainsaying, and let us move on.
I'm sorry to be so blunt, but your obdurate insistence upon a point that has been shown to have no rational support has become a tad irritating.
Okay smartass
Oh, oh!
I wanted to make sure you weren’t in the “RM cannot add info” crowd.
Do not assume that I am not in that "crowd". As above, I merely note that that there are people in another "crowd" who do believe that random genetic mutations can and do "add info". I've never suggested that I am one of that "crowd".
So basically the question boils down to: How can biodiversity increase when the selective factor can only removing unacceptable traits?
Well, I wouldn't personify "the selective factor", [by which I take you to mean, 'natural selection'], by using words such as "unacceptable". Being an adaptationist, I would prefer, 'maladaptive' traits.
quote:
I think it would be better phrased this way:--How can biodiversity increase where the causal factor to which the increase is attributed [ns] is only capable of removing traits from the total number of presently existing biodiverse traits?
You have to have more alleles being introduced to the population, by RM, than there are being removed from the population, by NS.
I keep on asking you about "NS", and you keep on answering about "RGM".
This is really irritating.
[qs] However, Wright and Kimura, as well as a number of 'anti-adaptationists', insist that 'rgm', all by itself, without any 'ns' at all, can and does increase biodiversity.
I would call that Genetic Drift. It is possible for it to lead to an increase in biodiversity but improbable.[/quote]
Some call it "Drift", some call it "Neutral Theory", all call it "anti-adaptationism"; and it, too, has its own "crowd". You and I may not belong to that "crowd", but it exists, nonetheless.
Just out of curiosity, why do you doubt that without the 'adaptation
component' that random genetic mutation could increase biodiversty, as so many other people seem to believe?
quote:
By 'prominent' I suppose you to mean 'numerically greater relative to other traits'. But how do you know that it is 'advantageous'? Because it has become 'numerically greater relative to other traits'?!? This is the old 'fitness' tautology. Like all tautologies and circular arguments, it sounds great,-- but means nothing.
An allele is advantageous when it affects the phenotype in a way that increases the chance of the allele to be present in future generations in higher quantities.
And here we go again. I ask a question about phenotypic traits [the only 'traits' that your "NS" can operate on, which was the point in question], and you answer about 'alleles'!! This, 'now you see 'em, now you don't', semantic shell-game you keep playing is really quite annoying.
IAC, even if you believe that a given allele equals a particular phenotypic trait [which, empirically-speaking, it does not], you are still left with the same 'survival of the fittest' tautology wrt 'alleles' as you have wrt 'phenotypic traits'. That is, your, "advantageous", is simply a re-phrasing of, "increases [the presence] of the allele in future generations" . And btw, nothing is 'advantageous' until it actually is advantageous. The mere chance that it 'might become' advantageous is not, in itself, advantageous. Not to an 'allele', and not to an organism/phenotype.
quote:
Actually, I mean that 'to select for' is meaningless. "Selection", in the notional darwinian sense of 'natural selection', can only 'subtract from', never 'add to', the biodiversity available to it. So, as I've said again and again, where increased biodiversity is concerned, 'positive selection' aka 'positive natural selection', is merely a fantasy.
The selection is positive when it is not selected against.
Meaning that addition is the absence of subtraction, I suppose?! That you 'save' a kitten's life every time that you refrain from drowning it?!?
What would you call a number that is non-zero and non-negative?[/qs]
What is the valid analogy that you are suggesting in your comparison of 'number theory' with 'natural selection'? That is, in empirical, scientific, biological terms, what is the difference between -3 rabbits in a copse and -12 rabbits in a copse? In biology, in biodiversity, quantities end at zero and begin at +1. There are no 'negative' numbers. Therefore there are no 'positive' numbers. There are only actual quantities of actual entities. Just, 'numbers'.
That's why mistaking arithmetic/statistics for biology, [which population geneticists make a career out of doing], is such a silly mistake. They are not the same thing, and your analogy is false.
I see what you mean that NS isn’t really “adding” anything to the biosphere, but if it is non-zero and non-negative, then calling it positive seems fine to me.
It may be fine by you, but it is meaningless since it is unecessary and redundant. Worse, it implies something that simply is not there. That is, 'value judgement' in an abstract notion/physical event [ns].
You get a constant influx of mutations to the population from RM. In a simplified model, NS just puts pressure on some of those mutations so that it is harder for them to reproduce. However, NS can also promote the reproduction of that mutation, if the mutation provides a benefit to reproducing.
Just more circular argumentation, i.e., 'begging the question', that you've been offering all along. It just does not fly.
Now, we can imagine mutations coming in from all over the place, in a way that each individual is more like a new bioform that it is a member of the parent bioform. In this case, every bioform that did not get selected against, or had a benefit that made reproduction easier, would be an increase in the biodiversity. In this case we would see biodiversity increase readily and quickly.
Actually, the moment that any novel bioform enters the biosphere, biodiversity is increased, and as soon as that bioform/taxon dies out, biodiversity is decreased, and, as I've told you many, many time, it does not matter whether there is only a single example of that particular bioform, or a million of them.
Nor does it matter wrt to diversity whether or not that novel bioform persists for an hour as one individual, or persists for a million years as a billion [roughly]identical individuals in the same taxon, the novel arrival of the first one increases biodiversity, and the death of the last one decreases biodiversity. Therefore a 'hopeful monster' increases biodiversity, and if it dies shortly after birth then it decreases biodiversity, albeit only for the short time that it formed a part of the biosphere. 'Inheritance of bioform over generations' is an aspect of evolutionary theory, but it does not necessarily, logically, pertain to biological diversity. If a biologically different bioform exists, even for only a minute, you cannot deny that was there, and that simply by virtue of its existence, it increased biodiversity for a time.
This, however, is not how it works in the real world. What we do have is a relatively small amount of mutations and those mutation are such that the new bioform is hardly distinguishable from the parent, if at all.
Hold on. Now you are saying that each new organism constitutes a brand new bioform. Technically, since no two organisms are ever exactly alike, that may be true. But it is useless and unenlightening. The whole point of biodiversity is that some bioforms are essentially different from other bioforms.
Taxonomy is founded upon degrees of 'sameness' and 'difference', and distinctions between basic, fundamental, essential, invariable, constant properties, and accidental, non-essential, variable, inconstant properties. It's a problem that goes back at least as far as Aristotle and haunts taxonomy to this very day. What, for instance, are the essential properties, or qualities, or traits, that define a human being as a human being, as opposed to those which define an orangutan as an orangutan? It is the assumption that human beings are essentially different from orangutans, and other organisms, as a particular, identifiable taxon, thankis to some constant, essential, basic property, that gives the word, 'biodiversity', meaning.
To admit of every trivial difference between individuals is to render 'biodiversity' meaningless.
It works out in a way that one allele might have an 89.67% chance of being passed on, and another has a 90% chance. This slight difference in that chance, when compounded over many generations leads to significant changes in the bioform. As long as there are significant changes in the bioform, speciation events are possible, and biodiversity can increase.
You seem to have completely forgotten about "NS", and to have moved on to "RGM", and examination of 'chance' as the source of increased biodiversity.
And btw, significant changes/differences in bioform IS biodiverity. You are still talking in circles.
It is NS that provided that extra third of a percent chance of the allele being passed on.
By what logic, inconceivable to me, did you arrive at that conclusion?
That is the positive selection that can “cause” the increase in biodiversity.
So now you are saying that 'positive selection' equals 'chance', aka 'good luck'?!? I guess that would make natural selection a matter of bad luck, wouldn't it? I'm not sure that 'luck' is a scientific phenomenon, however.
But on the semantic side, it doesn’t really “cause” it because the new information has been provided by RM, not NS. So, we can say that RM causes it, but without the selective pressure, the chances of being passed on would be random,
To the contrary, it would be non-random, since 'natural selection', [as nebulously defined as it is], would, by not acting, insure that the supposed "new information", i.e., the new bioform, would, must, persist, since without 'natural selection' there is nothing to prevent it from persisting. Indeed, because 'ns' is all-encompassing, and refers to any lethal attack on the bioform from any number of randomly appearing environmental agents, it is in fact 'ns' that makes the persistence of a novel bioform, 'a matter of chance', instead of 'a sure thing'.
Yes, NS is not the ”source’. But it can and does provide non-zero, non-negative pressure on bioforms so that their genotype has an actual better chance of reproduction, which causes the variation within the population, which is what can lead to a speciation event and thus an increase in biodiversity.
Look, you and I have a much better chance of living to be 100 if some maniac doesn't shoot us tomorrow, but his failure to murder us cannot be considered the cause of our subsequent longevity. Your reasoning is simply illogical.
But from RM, we have a constant addition of new “lives”. To not remove a new life means that bringing new life into the world is the default.
There you go again!! We are taking about "NS" and increased biodiversity. Please stop confusing that subject with that of "RGM" and increased biodiversity.
quote:
Environmental factors result in the differential mortality rates deaths of different organisms. Some organisms die sooner than others, from an almost infinite variety of particular causes, most of them environmental and/or organismic. Dressing up this fact/effect with labels like 'negative selection' and 'positive selection', and then awarding causal power to a label/fact/effect, is inane.
What about it, specifically, makes it inane?
What is there about believing that by attaching a label to something will explain that something, or in any way increase our understanding of that labelled something, is not inane?
The causal power is awarded because NS can have an effect that makes the allele more beneficial, that the allele has a higher probability of succeeding.
You keep on reiterating this belief of yours in circular, tautological language, without ever providing any logical line of reasoning to back it up!! You're not getting anywhere by simply repeating yourself, and if that is all you are going to do, then I'm simply going to ignore the issue from now on. I simply have no time for "Is so!/Is not!" gainsaying.
The increase in individuals with the allele are technically in the same bioform, but as more and more mutations stack up, the individuals become more and more distinct from that bioform and when a speciation event occurs, the biodiversity increases.
What's "speciation event", in your opinion, and what does "NS" have to do with it?
But speciation does not work like: bison --> horse.
It’d be more like: bison --> bisoe --> bosoe --> bosse --> hosse --> horse.
Well, that is your opinion of how evolution works, and of course you are welcome to it. Never mind about 'punk eek' for the present.
However, when it came to the great plains, biodiversity was not a matter evolution at all. Least of all a matter of bison gradually [well, quite suddenly, I suppose!] mutating into horses, alphabetically. It was a simple matter of people eliminating bison and introducing horses into that ecosystem. So why are you saying this stuff? It's entirely out of left field, completely non sequitur.
quote:
Meaning that 'rgm' supposedly causes the change in bioform, [additional bioform being an increase in biodiversity], and 'ns' supposedly causes a change in the numbers of the same bioform [no increase in biodiversity].
That seems about right.
Well, now that you understand, can we move on?
And that’s where the conflation of the word “cause” comes into play.
What "conflation"?!??
Can we say that either one of them really causes biodiversity, can’t we say that they both cause it? It depends on how we use the word “cause”.
Well, not being Humpty Dumpty, I believe that there is only one legitimate way in which to use the word, "cause". This one, [taken from The American Heritage Dictionary, although any other dictionary will serve]--
cause(kz)
n.
The producer of an effect, result, or consequence.
The one, such as a person, event, or condition, that is responsible for an action or result.

A basis for an action or response; a reason: The doctor's report gave no cause for alarm.
A goal or principle served with dedication and zeal: “the cause of freedom versus tyranny” (Hannah Arendt).
The interests of a person or group engaged in a struggle: “The cause of America is in great measure the cause of all mankind” (Thomas Paine).
Law.
A ground for legal action.
A lawsuit.
A subject under debate or discussion.
tr.v., caused, caus·ing, caus·es.
To be the cause of or reason for; result in.
To bring about or compel by authority or force:
The moderator invoked a rule causing the debate to be ended
Bold added to pertinent senses of the word.
What do you propose is the “fix” to the ToE that I would have a problem with?
The elimination of 'random chance' at the genomic level as the cause of adaptive evolution at the organismic level. Since that is the be-all and end-all of "the ToE", I'm pretty much saying that "the ToE" would have to be junked entirely, and replaced with a scientific theory of evolution that does not depend on luck as its essential constituent.
[qs] Just for shits and giggle, what if I concede that NS cannot do it, then what do you propose IS the “cause” of the increase in biodiversity that we observe? [qs] In a word? Autopoiesis.
--------------------------------------------------------------------------------

This message is a reply to:
 Message 120 by New Cat's Eye, posted 12-12-2007 11:56 AM New Cat's Eye has not replied

Replies to this message:
 Message 124 by bluegenes, posted 12-12-2007 6:24 PM Elmer has not replied
 Message 125 by MartinV, posted 12-13-2007 2:53 PM Elmer has replied
 Message 126 by RAZD, posted 12-13-2007 4:32 PM Elmer has not replied

  
Brad McFall
Member (Idle past 5051 days)
Posts: 3428
From: Ithaca,NY, USA
Joined: 12-20-2001


Message 123 of 140 (440345)
12-12-2007 6:17 PM
Reply to: Message 118 by Elmer
12-11-2007 11:15 PM


Re:the same question
Are you saying that Pangenesis is Lamarckian or French?

This message is a reply to:
 Message 118 by Elmer, posted 12-11-2007 11:15 PM Elmer has not replied

  
bluegenes
Member (Idle past 2495 days)
Posts: 3119
From: U.K.
Joined: 01-24-2007


Message 124 of 140 (440347)
12-12-2007 6:24 PM
Reply to: Message 122 by Elmer
12-12-2007 4:11 PM


Elmer writes:
In a word? Autopoiesis.
You created yourself? Well done!

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MartinV 
Suspended Member (Idle past 5847 days)
Posts: 502
From: Slovakia, Bratislava
Joined: 08-28-2006


Message 125 of 140 (440521)
12-13-2007 2:53 PM
Reply to: Message 122 by Elmer
12-12-2007 4:11 PM


I enjoy reading your posts Elmer. Your concept of natural selection seems to me to be very close the one I accepted as the more illuminating: natural selection only eliminates, kills and nothing else.
As to autopoiesis I don't know anything about it but I would say concept of "internal forces" might be closed to it. I believe evolution is over and driving forces of it are not taking effect anymore.

This message is a reply to:
 Message 122 by Elmer, posted 12-12-2007 4:11 PM Elmer has replied

Replies to this message:
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RAZD
Member (Idle past 1423 days)
Posts: 20714
From: the other end of the sidewalk
Joined: 03-14-2004


Message 126 of 140 (440549)
12-13-2007 4:32 PM
Reply to: Message 122 by Elmer
12-12-2007 4:11 PM


once more -- natural selection CAN increase diversity
Right away I have to stop you. Let's agree that to take the English language seriously, and not get lost in "Wonderland" with the likes of Humpty Dumpty. To be specific, in English,(and I supect any other earthly language), anything that is "greater than" something else is never "equal" to it.
Curiously that does not strike me as a good example of english.
Excuse me, but you seem to be forgetting that we were discussing "natural selection", not "random genetic mutation".
Exactly, and in that discussion we are discussing how natural selection actively selects some alleles in a population over others, and in the process mixes the alleles that are there, the old ones and the new ones. In the process natural selection makes new combinations that did not exist before even though it does not originate a single allele.
This is because the process is not just “subtraction” or “addition” but a multidimensional interaction that can easily multiply (literally, in both senses).
... and so can only decrease biodiversity, and never increase it.
Absolutely false, as demonstrated in Message 119 which you have ignored. Facts don't change because you ignore them.
Natural selection can also be seen as injecting an ecological factor into the process, one that mutation cannot do, but that becomes a part of the genotype of the individual just as much as a mutation does, and in this sense it does add to the overall evolution of species over time.
Hold on. Now you are saying that each new organism constitutes a brand new bioform. Technically, since no two organisms are ever exactly alike, that may be true. But it is useless and unenlightening. The whole point of biodiversity is that some bioforms are essentially different from other bioforms.
Actually that would be using the scientific definition of biodiversity instead of yours. Technically, since no two organisms are ever exactly alike, that IS true. The whole point about biodiversity is to consider ALL the diversity not just a subset of it.
Taxonomy is founded upon degrees of 'sameness' and 'difference', and distinctions between basic, fundamental, essential, invariable, constant properties, and accidental, non-essential, variable, inconstant properties. It's a problem that goes back at least as far as Aristotle and haunts taxonomy to this very day.
But we are talking about biodiversity, not taxonomy.
To admit of every trivial difference between individuals is to render 'biodiversity' meaningless.
False, still false. Repeating yourself doesn't make it true. Again, from wikipedia:
BiodiversityDefinitions
The most straightforward definition is "variation of life at all levels of biological organization".[3] A second definition holds that biodiversity is a measure of the relative diversity among organisms present in different ecosystems. "Diversity" in this definition includes diversity within a species and among species, and comparative diversity among ecosystems.
A third definition that is often used by ecologists is the "totality of genes, species, and ecosystems of a region". An advantage of this definition is that it seems to describe most circumstances and present a unified view of the traditional three levels at which biodiversity has been identified:
  • genetic diversity - diversity of genes within a species. There is a genetic variability among the populations and the individuals of the same species. (See also population genetics.)
  • species diversity - diversity among species in an ecosystem. "Biodiversity hotspots" are excellent examples of species diversity.
  • ecosystem diversity - diversity at a higher level of organization, the ecosystem. To do with the variety of ecosystems on Earth.
(Wikipedia, 2007)
Notice the part I have highlighted.
What's "speciation event", in your opinion, and what does "NS" have to do with it?
Speciation is when daughter populations no longer interbreed, because they don't or can't select individuals from the other population as mates. Natural selection causes speciation. Speciation is a definite increase in biodiversity (see 2nd bullet above).
Thus you are wrong and the rest of your post is irrelevant. You do waste a lot of time going on about your opinion.
Enjoy.

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This message is a reply to:
 Message 122 by Elmer, posted 12-12-2007 4:11 PM Elmer has not replied

Replies to this message:
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Elmer
Member (Idle past 5922 days)
Posts: 82
Joined: 01-15-2007


Message 127 of 140 (440567)
12-13-2007 5:37 PM
Reply to: Message 125 by MartinV
12-13-2007 2:53 PM


Hi martin;
You say--
As to autopoiesis I don't know anything about it but I would say concept of "internal forces" might be closed to it. I believe evolution is over and driving forces of it are not taking effect anymore.
I believe that a scientific mechanism like autopoiesis, like any other scientific causal mechanism, requires a universal, discernible driving _force_ in order to bring it into xistence, and to keep it in effect. Just what that force may be, we'll leave for another time.
However, I must disagree with your opinion that such a force has disappeared, and is no longer in effect. In my opinion, natural forces are either eternal, or are integral to any material universe, and come into bing with that universe, and last for as long as it does. I'm partial to the 'eternal' option, actually.
With that in mind, I personally believe that biological evolution in our biosphere is just as much in operation today as it ever has been.

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MartinV 
Suspended Member (Idle past 5847 days)
Posts: 502
From: Slovakia, Bratislava
Joined: 08-28-2006


Message 128 of 140 (440749)
12-14-2007 11:39 AM
Reply to: Message 126 by RAZD
12-13-2007 4:32 PM


Re: once more -- natural selection CAN increase diversity
In the process natural selection makes new combinations that did not exist before even though it does not originate a single allele.
What combinations do you have on your mind? Wellcome in reality using your maths:
.
.
.
10 x 15 x 3 x 3 = 1350 possible phenotypes
Now it is
10 x 15 x 3 x 6 = 2700 possible phenotypes
.
.
.
Heterozygosity of mice is 35%. Having 30.000 genes there are 10.500 loci which have at least 2 alleles. It means 3 combinations using your maths. What do you think how many possible genotypes/phenotypes mice could have? Using your inetresting maths it will be: 3 to the 1500 = 4.8 e+715. I am afraid there are not so many electrons and atoms in the Universe that there are possible phenotypes of mice.
What combinations of these do you have on your mind?

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 Message 126 by RAZD, posted 12-13-2007 4:32 PM RAZD has replied

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RAZD
Member (Idle past 1423 days)
Posts: 20714
From: the other end of the sidewalk
Joined: 03-14-2004


Message 129 of 140 (440841)
12-14-2007 7:21 PM
Reply to: Message 128 by MartinV
12-14-2007 11:39 AM


Re: once more -- natural selection CAN increase diversity
... how many possible genotypes/phenotypes mice could have? Using your inetresting maths it will be: 3 to the 1500 = 4.8 e+715. I am afraid there are not so many electrons and atoms in the Universe that there are possible phenotypes of mice.
Exactly. Now ask yourself how much natural selection plays a role in which ones are formed from the phenotypes that exist. Thanks.
Enjoy.

This message is a reply to:
 Message 128 by MartinV, posted 12-14-2007 11:39 AM MartinV has not replied

  
Omnivorous
Member
Posts: 3983
From: Adirondackia
Joined: 07-21-2005
Member Rating: 7.0


Message 130 of 140 (440844)
12-14-2007 7:35 PM
Reply to: Message 124 by bluegenes
12-12-2007 6:24 PM


bluegenes writes:
Elmer writes:
In a word? Autopoiesis.
You created yourself? Well done!
Come now, you've read his posts.
It would be remarkable if he created himself, but it clearly wasn't well done.

Real things always push back.
-William James
Save lives! Click here!
Join the World Community Grid with Team EvC!
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This message is a reply to:
 Message 124 by bluegenes, posted 12-12-2007 6:24 PM bluegenes has not replied

  
Quetzal
Member (Idle past 5890 days)
Posts: 3228
Joined: 01-09-2002


Message 131 of 140 (449229)
01-17-2008 8:30 AM


Natural Selection and Biodiversity - An Example (cont.)
In a previous, exceptionally off-topic (even for me) thread digression, an interesting discussion occurred concerning the relationship of natural selection to biodiversity between myself (obviously a proponent) and Elmer, who feels the concept of natural selection is vacuous - and hence meaningless in the context of biodiversity. I thought that this would be a good place to continue that conversation.
In order to avoid a descent into too scattershot or rambling a discussion, I’d like to try and frame the question a bit more clearly. In essence, there is a direct observation of a phenomenon that needs explaining.
Note: to avoid confusion, I’d like to clarify three terms that I will be using: biodiversity, guild composition, and selection pressure.
1. Biodiversity: When discussing biodiversity in this context, I will be focusing on RAZD’s second definition: number of species in a given location. This is the definition most relevant to the example, and also the one I’m most familiar with because this is the scale (landscape) at which I work.
2. Guild composition (or composition tout court): I’ll be using “composition” as a shorthand for a combination of quantitative measures: species diversity, functional distribution, relative abundance, etc. It is the differences observed in these measures which are most relevant to the example.
3. Natural selection: The non-random action of the suite of environmental factors (“selection pressures”) that affect a population. Both biotic and abiotic factors extant in the area under consideration are subsumed under “selection pressure”. If it becomes necessary, more detail can be examined.
Enough preamble, here is the observation that needs explaining:
Dung beetles (Coleoptera: Scarabaeinae) represent a speciose group of organisms with critical functional roles (decomposition, nutrient recycling) in many ecosystems. They are especially common in the tropics, in both the Old and New Worlds. At the landscape level, they form complex, multi-species guilds whose composition is differentiated by habitat type. The group appears highly sensitive to environmental change, and in fact guild composition can be directly mapped to different environmental gradients; for instance, that between disturbed habitat, ecotone (or transitional habitat) and mature forest. Any changes in habitat are directly reflected in changes in guild composition, whether the habitat change is “negative” (in the sense of anthropogenic impacts such as defaunation, introduction of exotic species like cattle, deforestation, etc), or “positive” (in the sense of habitat restoration, natural succession, etc). In fact, this guild’s composition is so sensitive to environmental change and so tightly correlated to habitat integrity that it has been proposed as a valid surrogate for monitoring the health of the entire landscape - including all its other species assemblages and the ecosystem processes on which they depend. As the habitat changes, so too does the composition and structure of the guild.
So here’s the question before the board: What is the explanation (i.e., mechanism) which accounts for the tight correlation between guild structure/composition and habitat/habitat change with these organisms?
My answer: The observed differentiation can be accounted for by subtle differences in the environmental factors existing at each microsite along the given gradient. The interplay of these factors as they affect the specific species populations composing the guild at each microsite - subsumed under the term “natural selection” - is the mechanism by which guild composition changes in lockstep with changes in these environmental factors. These factors (“selection pressures”) either favor or inhibit the survival and reproduction of specific species which comprise the guild at each site, thus changing species diversity, relative abundance, or the other observed measures of guild structure and composition.
Elmer’s explanation is:??????????

Replies to this message:
 Message 132 by Elmer, posted 01-17-2008 3:41 PM Quetzal has replied

  
Elmer
Member (Idle past 5922 days)
Posts: 82
Joined: 01-15-2007


Message 132 of 140 (449299)
01-17-2008 3:41 PM
Reply to: Message 131 by Quetzal
01-17-2008 8:30 AM


Re: Natural Selection and Biodiversity - An Example (cont.)
HYi q;
You say--
Natural selection: The non-random action of the suite of environmental factors (“selection pressures”) that affect a population.
What do you mean by "non-random action"? As far as I know, any unintentional, accidental cause is 'random', and every effect brought about by such causes are 'random'.
NOTE-- If you adopt the materialist/mechanist/positivist stance, all causes are said to be the direct, determined, linear 'non-random' effects of mechanically determined, 'non-random'cause--and so on. Where everything is mechanical, nothing is truly random, and if nothing is truly random, nothing is truly non-random, either, because the word has lost all real meaning, and is just a useful inanity.
Therefore, if you want to use the words, 'random' and 'non-random, you must either abandon materialist/mechanist determinism, or, change the word 'random' to 'coincidental', wherebye one mechanically determined effect is only coincidentally correlated to some other mechanically determined but mechanically separate cause and effect.
That is, in fact, exactly what darwinists have done ever since Fisher, claiming that the only randomness encountered in their kind of adaptationist evolution was the coincidental quality wherebye the presumed determinist mechanics of genetic mutation->phenotypic trait and the presumed determinist mechanics of all environmental events were only positively correlated to each other [adaptive] by lucky coincidence. They express this as "random with regard to fitness", where, in this case at least, they intend 'fitness' to mean 'adaptedness'.
Basing a scientific case on coincidence, even calling it 'randomness' [a quality that really doesn't exist, according to materialist/mechanist/positivist/darwinist doctrine], is no better than calling it 'luck', or some other [as far as empirical science is concerned], mystical inanity, i.e., superstion. And basing your definition of 'natural selection' on the determinist understand of 'random' leaves it equally inane, equally superstitious.
Therefore, like it or not, if you want to use your 'non-random action' phrasing then you must abandon materialist physical/mechanical determinism as far as RMNS is concerned. If you wish to retain 'non-random action' with regard to environment/organism interaction, its true that mechanical , ergo determined but unintentional, events happen everyday--goats tumble from precipices and die, fish die when waterholes dry up, trees get blown down, and on and on. But claiming that such events represent,
"The non-random action of the suite of environmental factors (“selection pressures”) that affect a population." is essentially saying nothing at all. Its just 'noise'. Every event in the world can apply under that heading, so instead of saying "non-random action" just say that, IYO, "NS" is arithmetically determined physical effect on a statistic [a local number, a 'population'] mechanically determined by "a suite" of imparticular local physical causes acting in a strictly mechanical [albeit accidental, in the sense of unintentional and unforeseeable, and largely too irregular and anomalous to be predictable; i.e., stochastic, random] fashion. Ooops, there goes non-random causation, and with it, non-random effect. Unless you can defend the determinist position that everything that happens, has to happen, because everything is inevitable, immutable, and unstoppable. A clock-work universe.
I believe that quantum field theory and its alocality has put the materialist/mechanical/determinist view to bed for good and all, but not being a quantum physicist, nor anything remotely close to it, I can't do any more to defend this indeterminist universe than a materialist can to defend his/her determinist universe. And this is the point at which all discussions of "NS" annd "RM", IOW, darwinism, seem to founder. If determinism is true, in the mechanist absolute and total sense, then there is absolutely no sense in debating anything; it is merely another meaningless, absurd something that we are compelled to do, like puppets on a string.
Both biotic and abiotic factors extant in the area under consideration are subsumed under “selection pressure”. If it becomes necessary, more detail can be examined.
That's the problem. The whole of existence is subsumed under your definition, and that which is everything, is indefinite, and using the indefinite to create a definition is, to say the least, unhelpful.
You still have to find a way to define "NS" in a way that means more than, say , "The Environment", "Nature", "The gods", "GOD", "The Good Fairy","Chance", "Luck", "The Fates", "a suite of environmental factors", or "The Great Flying Spaghetti Monster" already do.
I'll await your next formulation.

This message is a reply to:
 Message 131 by Quetzal, posted 01-17-2008 8:30 AM Quetzal has replied

Replies to this message:
 Message 133 by Quetzal, posted 01-17-2008 7:19 PM Elmer has replied

  
Quetzal
Member (Idle past 5890 days)
Posts: 3228
Joined: 01-09-2002


Message 133 of 140 (449365)
01-17-2008 7:19 PM
Reply to: Message 132 by Elmer
01-17-2008 3:41 PM


Re: Natural Selection and Biodiversity - An Example (cont.)
I'm afraid you appear to be making a lot of noise with little substance, Elmer. I thought better of you. Simply answer the question posed in the post: what mechanism do you propose that explains the observation I outlined? We know you think natural selection is vacuous. Now tell us what the alternative is. Then, perhaps, we can go back and discuss why you think the concept has no merit. Okay?
Just a quick note on "random" vs "non-random" in the context in which I used it. The effect of the various environmental factors on the guild is NOT random in the sense that the outcome will vary all over the place. Whereas we may not be able to actually predict the specific outcome (due to the complexity of the variables and their interactions, not because of randomness) the actual observations in the field conducted by myself and other scientists demonstrate beyond reasonable doubt that the guild composition of the Scarabaeinae can be directly and positively correlated to the environmental factors present at each microsite. IOW, it is at least partially (and I think mostly) deterministic. Else why would changes in the factors correlate so precisely to changes in composition, and why would we be able to use these organisms as effective surrogates for monitoring biodiversity?
Answer the question posed in my previous post, then maybe we can go on to something else besides your repetitious rant against natural selection.

This message is a reply to:
 Message 132 by Elmer, posted 01-17-2008 3:41 PM Elmer has replied

Replies to this message:
 Message 134 by Elmer, posted 01-17-2008 8:03 PM Quetzal has replied

  
Elmer
Member (Idle past 5922 days)
Posts: 82
Joined: 01-15-2007


Message 134 of 140 (449386)
01-17-2008 8:03 PM
Reply to: Message 133 by Quetzal
01-17-2008 7:19 PM


Re: Natural Selection and Biodiversity - An Example (cont.)
Hi q;
You say;
I'm afraid you appear to be making a lot of noise with little substance, Elmer.
Funny, that's exactly what I've been saying about your "NS", and your attempted 'definition' of it.
I thought better of you.
I, on the other hand, expected no better than what you provided.
Simply answer the question posed in the post: what mechanism do you propose that explains the observation I outlined?
Why should I do any such thing before you make scientific sense of your "Natural Selection". After all that is what our debate is all about, so don't try to shift the burden onto my shoulders. After we've disposed of your "mechanism", NS, [that is,either you make science out of it, or you discard it as a load of pretentious bafflegab, or you quit in frustration]then maybe I'll tell you my mechanism. Hint-- lamarckism was its scientific ancestor, and its philosophical roots go all the way back to Heraklitus. And that is all I'm going to say until you deal satisfactorily [as far as I'm concerned] with "NS". That is, when you demonstrate reasonably that natural selection is more than an inane 'catch-phrase'--the 'scientific' equivalent of a bumper-sticker.

This message is a reply to:
 Message 133 by Quetzal, posted 01-17-2008 7:19 PM Quetzal has replied

Replies to this message:
 Message 135 by Quetzal, posted 01-17-2008 8:15 PM Elmer has not replied
 Message 136 by Woodsy, posted 01-18-2008 6:44 AM Elmer has not replied
 Message 138 by Admin, posted 01-18-2008 9:11 AM Elmer has not replied

  
Quetzal
Member (Idle past 5890 days)
Posts: 3228
Joined: 01-09-2002


Message 135 of 140 (449390)
01-17-2008 8:15 PM
Reply to: Message 134 by Elmer
01-17-2008 8:03 PM


Re: Natural Selection and Biodiversity - An Example (cont.)
Nope, doesn't work that way. I gave you a scientific observation, then asked the question about a mechanism to explain the observation. I then did you the courtesy of providing my explanation. Once you get around to providing yours, then we can move forward. Your repeated attempts to avoid addressing the specific example provided aren't doing your cause much good, because it is starting to appear you don't actually have an explanation.
You're right, I probably will get tired of you beating around the bush and avoiding the question. I have a low tolerance for evasion.

This message is a reply to:
 Message 134 by Elmer, posted 01-17-2008 8:03 PM Elmer has not replied

  
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