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Author Topic:   Is there more than one definition of natural selection?
Allopatrik
Member (Idle past 6215 days)
Posts: 59
Joined: 02-07-2007


Message 76 of 302 (393075)
04-03-2007 1:27 PM
Reply to: Message 75 by Fosdick
04-03-2007 12:51 PM


Penetrance
quote:
In fact many genes exhibit a random effect on phenotype, a phenomenon known in genetics as penetrance.
Just to be clear, penetrance is actually the degree to which a gene controls its phenotypic expression. Crashfrog's example is of a gene with low penetrance. A gene whose phenotype is always expressed in every individual has high penetrance.

Natural Selection is not Evolution-- R.A. Fisher

This message is a reply to:
 Message 75 by Fosdick, posted 04-03-2007 12:51 PM Fosdick has replied

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 Message 77 by crashfrog, posted 04-03-2007 1:41 PM Allopatrik has not replied
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crashfrog
Member (Idle past 1495 days)
Posts: 19762
From: Silver Spring, MD
Joined: 03-20-2003


Message 77 of 302 (393079)
04-03-2007 1:41 PM
Reply to: Message 76 by Allopatrik
04-03-2007 1:27 PM


Re: Penetrance
I didn't explain it very well; thanks for the correction.

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 Message 76 by Allopatrik, posted 04-03-2007 1:27 PM Allopatrik has not replied

Fosdick 
Suspended Member (Idle past 5529 days)
Posts: 1793
From: Upper Slobovia
Joined: 12-11-2006


Message 78 of 302 (393085)
04-03-2007 1:54 PM
Reply to: Message 76 by Allopatrik
04-03-2007 1:27 PM


Re: Penetrance
Allopatrik wrote:
Just to be clear, penetrance is actually the degree to which a gene controls its phenotypic expression. Crashfrog's example is of a gene with low penetrance. A gene whose phenotype is always expressed in every individual has high penetrance.
For the frog's benefit, Allopatrik, would you mind explaining what "expression" means? What is being expressed and what is expressing it? I'd like to know if I am wrong that a genetic message”the genotype” is expressed in a protein”the phenotype.
”HM

This message is a reply to:
 Message 76 by Allopatrik, posted 04-03-2007 1:27 PM Allopatrik has replied

Replies to this message:
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crashfrog
Member (Idle past 1495 days)
Posts: 19762
From: Silver Spring, MD
Joined: 03-20-2003


Message 79 of 302 (393092)
04-03-2007 2:08 PM
Reply to: Message 78 by Fosdick
04-03-2007 1:54 PM


Re: Penetrance
For the frog's benefit, Allopatrik, would you mind explaining what "expression" means? What is being expressed and what is expressing it?
I know what expression is. How about you give the arrogant condescension a rest?
I'd like to know if I am wrong that a genetic message”the genotype” is expressed in a protein”the phenotype.
Don't misrepresent the discussion. You know that's not the issue under dispute, here. Answer the questions I posed to you in my post.

This message is a reply to:
 Message 78 by Fosdick, posted 04-03-2007 1:54 PM Fosdick has not replied

Allopatrik
Member (Idle past 6215 days)
Posts: 59
Joined: 02-07-2007


Message 80 of 302 (393126)
04-03-2007 3:54 PM
Reply to: Message 78 by Fosdick
04-03-2007 1:54 PM


Re: Penetrance
quote:
I'd like to know if I am wrong that a genetic message”the genotype” is expressed in a protein”the phenotype.
Most geneticists I'm familiar with refer to the protein as the gene's product, not the phenotype. The phenotype is more properly the result of the protein's activity or function. Example: the enzyme beta-galactosidase is the product of the gene;the phenotype is the specific enzymatic activity on the galactose substrate.

Natural Selection is not Evolution-- R.A. Fisher

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Allopatrik
Member (Idle past 6215 days)
Posts: 59
Joined: 02-07-2007


Message 81 of 302 (393142)
04-03-2007 4:51 PM
Reply to: Message 44 by Percy
04-01-2007 3:27 PM


Thoughts on Fitness and Natural Selection
quote:
Maybe I'll change my mind when I finally understand what you're saying, but I cannot at this time see how a differential reproductive success of 0 is always the equivalent of no natural selection taking place. For example, imagine two subpopulations which produce equal numbers of offspring, but that during that particular reproductive season leading up to the equal numbers of offspring that many eggs in both subpopulations were eaten by predators. That's natural selection, even though the differential reproductive success was 0.
Sorry for jumping in again, but this particular passage interested me.If the relative (I prefer ”relative’ to ”differential’, but that’s just me) reproductive success of one subpopulation is identical to that of the other, than the two subpopulations have identical fitness. Having identical fitness does not mean the absence of natural selection. What it does mean is the allelic frequencies of these subpopulations will change relative to each other randomly, entirely due to genetic drift.
Consider the Peppered Moth. It undergoes both bat and bird predation. Under bat predation, both the light and dark genotypes have equal fitness, since bats do not discriminate by moth coloration. One would expect, with no bird predation, to see the frequencies of the two genotypes to drift at random. Under bird predation, however, the fitness of the two genotypes depend on the background coloring of the trees, and one genotypic frequency will increase steadily at the expense of the other, even if bat predation is occurring simultaneously.
A

Natural Selection is not Evolution-- R.A. Fisher

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 Message 44 by Percy, posted 04-01-2007 3:27 PM Percy has replied

Replies to this message:
 Message 82 by Percy, posted 04-03-2007 9:16 PM Allopatrik has replied

Percy
Member
Posts: 22504
From: New Hampshire
Joined: 12-23-2000
Member Rating: 4.9


Message 82 of 302 (393194)
04-03-2007 9:16 PM
Reply to: Message 81 by Allopatrik
04-03-2007 4:51 PM


Re: Thoughts on Fitness and Natural Selection
Allopatrik writes:
Sorry for jumping in again, but this particular passage interested me.
Hey, jump on in, the water's fine. All threads are open to all members.
Sorry for jumping in again, but this particular passage interested me.If the relative (I prefer ”relative’ to ”differential’, but that’s just me) reproductive success of one subpopulation is identical to that of the other, than the two subpopulations have identical fitness. Having identical fitness does not mean the absence of natural selection. What it does mean is the allelic frequencies of these subpopulations will change relative to each other randomly, entirely due to genetic drift.
Right, I agree with this. I wonder if this is what Quetzal was saying, but I just couldn't tell?
I'm finding this discussion defining natural selection to be an unexpectedly tough slog. We can't seem to get out of our own way. The approach I'm lobbying for is to start with a simple definition from which we elaborate. I proposed that we start with Darwin's definition, but I'm flexible as long as we start simply. I do feel that we're at far too detailed a level since there isn't even agreement that sexual selection is a type of natural selection.
--Percy

This message is a reply to:
 Message 81 by Allopatrik, posted 04-03-2007 4:51 PM Allopatrik has replied

Replies to this message:
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Wounded King
Member
Posts: 4149
From: Cincinnati, Ohio, USA
Joined: 04-09-2003


Message 83 of 302 (393252)
04-04-2007 2:31 AM
Reply to: Message 75 by Fosdick
04-03-2007 12:51 PM


Re: "Genetic determinsm" et al.
You seem to ignore the fact that a genetic message is transcribed from DNA by mRNA, and then, on its way to a ribosome, that message is translated by tRNA into peptides, eventually joining up with a ribosome to assemble the protein. There really are information-rich messages flinging inside living cells. And genes do indeed express themselves right there in those industrial ribosomes.
Ugh, that has to be one of the the sloppiest and least accurate descriptions of the process I have seen which still used all the right terms. DNA isn't transcribed by mRNA but to mRNA by the RNA polymerase. The events you describe as occurring on the way to the ribosome actually occur within the ribosome, the ribosomal machinery is as much a part of the translational machinery as tRNA is not merely some subsequent stage of assembly. tRNA isn't actively translating anything, merely bringing the write amino acids to the site of translation.
No doubt once again pointing out your tenuous grasp of molecular biology is only ankle-biting.
TTFN,
WK
P.S. Care to address Message 66 yet?

This message is a reply to:
 Message 75 by Fosdick, posted 04-03-2007 12:51 PM Fosdick has replied

Replies to this message:
 Message 85 by Fosdick, posted 04-04-2007 11:35 AM Wounded King has replied

Allopatrik
Member (Idle past 6215 days)
Posts: 59
Joined: 02-07-2007


Message 84 of 302 (393313)
04-04-2007 10:42 AM
Reply to: Message 82 by Percy
04-03-2007 9:16 PM


Natural vs Sexual Selection
quote:
I'm finding this discussion defining natural selection to be an unexpectedly tough slog. We can't seem to get out of our own way. The approach I'm lobbying for is to start with a simple definition from which we elaborate. I proposed that we start with Darwin's definition, but I'm flexible as long as we start simply. I do feel that we're at far too detailed a level since there isn't even agreement that sexual selection is a type of natural selection.
I get that feeling as well. For what it is worth, I tend to consider sexual selection as merely a certain kind of animal behavior, subject to natural selection like everything else. As an example, consider first a population of deer mice living in an open, grassy field. These mice are nocturnal, so they do all of their foraging under the cover of darkness. Now suppose a behavioral variant arises that forages during the day. Such behavior in an open field during the day exposes these mutant mice to predation from diurnal animals, such as hawks. This behavioral variation will be selected against if it raises the risk of predation significantly, and would not be expected to become common in the population. Now consider other kinds of behavior in the same population. Let’s assume females only choose mates who smell ”right’--those who possess a certain pheromone. If we imagine a variant male being born who does not possess the requisite pheromone, it should be easy to see that such variants will not become common in the population.
So, what is the difference between the two scenarios? Why would we consider the behavior that affects predation risk qualitatively different from the other, which affects mating success? In both cases we have behavioral variants (or, more properly, the genes underlying the behavior) competing with each other for replicative success. I would argue both scenarios are examples of natural selection in action.
A
Edited by Allopatrik, : Spelling

Natural Selection is not Evolution-- R.A. Fisher

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Replies to this message:
 Message 89 by Fosdick, posted 04-04-2007 12:42 PM Allopatrik has replied

Fosdick 
Suspended Member (Idle past 5529 days)
Posts: 1793
From: Upper Slobovia
Joined: 12-11-2006


Message 85 of 302 (393316)
04-04-2007 11:35 AM
Reply to: Message 83 by Wounded King
04-04-2007 2:31 AM


Re: "Genetic determinism" et al.
Wounded King is a subtle monarch, at least when it comes to helping me get a leg up on those empirical evolutionary “forces.” His Majesty has written:
quote:
“This has to be the stupidest example ever...
“Ugh, that has to be one of the the sloppiest and least accurate descriptions of the process I have seen . ”
Sloppy is as sloppy does, even with extra articles. BTW, Wounded King, where exactly were you wounded? A frontal lobe perhaps?
WK wrote:
DNA isn't transcribed by mRNA but to mRNA by the RNA polymerase. The events you describe as occurring on the way to the ribosome actually occur within the ribosome, the ribosomal machinery is as much a part of the translational machinery as tRNA is not merely some subsequent stage of assembly.
You can have your polymerase enzyme argument; it’s perfunctory anyway. But translation does NOT occur in the ribosome; it occurs in the cytoplasm. Transfer RNA serves as an interpreter during translation” and of course enzymes and ATP are involved with that, too. From there the tRNA joins up with a ribosome to build polypeptydes. Time to get down off your throne and get back to school.
And as for your Message 66:
...Once again, no one has said that NS and SS are the same thing, they have repeatedly said that SS is a subset of NS and therefore not seperate and not a non-selective factor.
My point all along has been that nonrandom mating (SS) may possibly occur and eventually affect the course of a population’s evolution without NS necessarily playing a role. I agree that nonrandom mating can be provocative of NS, but it’s not necessarily a turn-key operation. Can you prove to me that SS will always provoke NS? Why does SS have to always be a sub-process of NS? Why couldn’t it be a co-process or even a counter-process?
”HM

This message is a reply to:
 Message 83 by Wounded King, posted 04-04-2007 2:31 AM Wounded King has replied

Replies to this message:
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AdminNosy
Administrator
Posts: 4754
From: Vancouver, BC, Canada
Joined: 11-11-2003


Message 86 of 302 (393317)
04-04-2007 11:41 AM
Reply to: Message 85 by Fosdick
04-04-2007 11:35 AM


Warning Hoot
BTW, Wounded King, where exactly were you wounded? A frontal lobe perhaps?
This is a stupid attack on WK. His comments were about the details of your description of the protein synthesis process. He then pointed out exactly where you were, in his opinion, in error.
I suspect that you shouldn't be mouthing off -- for two reasons:
1) it will get you suspended.
2) I think WK actually knows what he is talking about and you will look fooish when he points out (again) where you are wrong.
Last warning!

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AZPaul3
Member
Posts: 8563
From: Phoenix
Joined: 11-06-2006
Member Rating: 4.7


Message 87 of 302 (393318)
04-04-2007 11:54 AM


Is SS NS or Not?
Sexual Selection
Special form of natural selection based on an organism's ability to mate. Some animals possess characteristics that are more attractive to potential mates, such as the distinctive plumage of some male birds. Individuals with such characteristics mate at higher rates than those without, ensuring more next generation offspring will inherit the desirable trait. As generations procreate the desirable trait becomes increasingly common, further boosting the sexual disadvantage for individuals who lack the desired trait.
National Geographic
Sexual selection: Selection which promotes traits that will increase an organism's success in mating and ensuring that its gametes are successful in fertilization. This is distinct from natural selection which acts simply on traits which influence fecundity and survival.
Natural History Collections: Glossary P-Z
Sexual selection: A type of natural selection that acts differently on males and females of the same species. Traits involved in mate competition (e.g., canines, flashy peacock tail) are products of sexual selection.
http://web.missouri.edu/~flinnm/courses/mah/glossary.htm
The theory of sexual selection was first proposed by Charles Darwin in his book The Origin of Species, though it was primarily devoted to natural selection. A later work, The Descent of Man and Selection in Relation to Sex dealt with the subject of sexual selection exhaustively, in part because Darwin felt that natural selection alone was unable to account for certain types of apparently non-competitive adaptations, such as the tail of a male peacock.
Sexual selection - Wikipedia
Since the discipline itself cannot agree whether Sexual Selection is distinct from or is a type of Natural Selection, agreement in this thread is dubious.

Replies to this message:
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Wounded King
Member
Posts: 4149
From: Cincinnati, Ohio, USA
Joined: 04-09-2003


Message 88 of 302 (393321)
04-04-2007 12:29 PM
Reply to: Message 87 by AZPaul3
04-04-2007 11:54 AM


Re: Is SS NS or Not?
Only the Edinburgh site makes a claim that sexual selection is distinct and if you look at the definition it gives for Natural Selection...
The mechanism by which heritable traits which increase an organism's chances of survival and reproduction are more likely to be passed on to the next generation than less advantageous traits.
Sexual selection seems to fit right in with this definition since it clearly influences an organism's chances of reproduction. Edinburgh seem to have treated reproduction and fecundity as the same thing, which they aren't.
Be that as it may, I agree that if your definition of NS only encompasses survival and fecundity then you can make a clear case for a distinction. The real question was whether Hoot Mon could make such a case, and he seems to have singularly failed to do so.
Even if we can't necessarily agree on a canonical definition of NS or SS we should still be able to agree on the implications of accepting specific definitions.
TTFN,
WK

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Fosdick 
Suspended Member (Idle past 5529 days)
Posts: 1793
From: Upper Slobovia
Joined: 12-11-2006


Message 89 of 302 (393325)
04-04-2007 12:42 PM
Reply to: Message 84 by Allopatrik
04-04-2007 10:42 AM


Are there 5 evolutionary processes?
Allopatrik wrote:
[C]onsider first a population of deer mice living in an open, grassy field. These mice are nocturnal, so they do all of their foraging under the cover of darkness. Now suppose a behavioral variant arises that forages during the day. Such behavior in an open field during the day exposes these mutant mice to predation from diurnal animals, such as hawks...So, what is the difference between the two scenarios? Why would we consider the behavior that affects predation risk qualitatively different from the other, which affects mating success? In both cases we have behavioral variants (or, more properly, the genes underlying the behavior) competing with each other for replicative success. I would argue both scenarios are examples of natural selection in action.
Allopatrik, I see your point and mostly agree. But doesn't your point tend to blur the coherent meanings of any categorical distinctions amonst the so-called evolutionary "forces"? (I cringe to use the term “forces,” but I’ll go along with the crowd.)
In these threads we have competing arguments running a spectrum of NS meanings. At one end NS is the Final Cause to which all other evolutionary "forces" serve supporting roles (paleo-Darwinism); at the other end NS is merely a Causal Factor that works co-operationally with other evolutionary "forces" (neo-Darwinism).
So, I have another question for you. Back in Message 32 I mentioned this observation of counter-processing by two evolutionary geneticists, Hartl & Jones:
quote:
It is apparent from [their studies] that selection tends to eliminate harmful alleles from a population. How, harmful alleles can never be eliminated totally because recurrent mutation of the normal allele continually creates new harmful alleles. These new mutations tend to replenish harmful alleles eliminated by selection. Eventually the population will attain a state of equilibrium in which the new mutations exactly balance the selective eliminations .
Is it fair for me to extrapolate from this, then, that the "forces" of evolution may be viewed in any of these process-oriented contexts?:
1. Independent processes.
2. Sub-processes.
3. Super-processes.
4. Co-processes.
5. Counter-processes.
I’ve been arguing that all five processes are possible along the course of an evolutionary continuum. What do you think about it?
”HM

This message is a reply to:
 Message 84 by Allopatrik, posted 04-04-2007 10:42 AM Allopatrik has replied

Replies to this message:
 Message 96 by Allopatrik, posted 04-04-2007 2:55 PM Fosdick has not replied

Wounded King
Member
Posts: 4149
From: Cincinnati, Ohio, USA
Joined: 04-09-2003


Message 90 of 302 (393328)
04-04-2007 12:57 PM
Reply to: Message 85 by Fosdick
04-04-2007 11:35 AM


Re: "Genetic determinism" et al.
This has to be the stupidest example ever...
You have yet to provide anything to cause me to revise my opinion, your example was one where sexual selection and natural selection would cooperate, the exact opposit of what you were trying to demonstrate. If you think it wasn't then explain why.
You can have your polymerase enzyme argument; it’s perfunctory anyway.
It seems that whenever you get your basic molecular biology wrong it is merely perfunctory.
But translation does NOT occur in the ribosome
___
{o,o}
|)__)
-"-"-
Oh rly?
Please see here, here, here,here, here, here and most of the rest of the internet.
My point all along has been that nonrandom mating (SS)...
Since non-random mating and sexual selection are not the same thing this makes your point rather irrelevant.
Can you prove to me that SS will always provoke NS? Why does SS have to always be a sub-process of NS? Why couldn’t it be a co-process or even a counter-process?
You may have seen what AZPaul wrote upthread. If you want to define NS narrowly as only selection acting on survival and fecundity then I agree that you can discriminate between NS and SS as forces. Then you need to add in a whole lot of other selective forces which are not sexual, survival or fecundity. I prefer to treat the various element of fecundity, survival, sexual, gametic,viability and whatever other forms of selection act upon heritable genetic chracteristics to influence allele frequencise in subsequent generations as all elements of Natural Selection.
TTFN,
WK

This message is a reply to:
 Message 85 by Fosdick, posted 04-04-2007 11:35 AM Fosdick has replied

Replies to this message:
 Message 92 by Fosdick, posted 04-04-2007 1:45 PM Wounded King has replied
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