I'll have to be brief in response to the first three links and first few points, as the Joggins material are new to me and I'm starting to read the links and google some others.
A quick perusal of message 21 by Bill talks about 'rhythms' of layers that alternate between brackish water deposits and costal plains,with periodic subductive episodes that cause the alternations. Continuous deposition doesn't seem inconsistent here.
As to river strata formation, some googling led me to this site
http://www.cox-internet.com/coop/deltawebpage.htmlwhere in figure 12 one sees that several lobes of Mississippian deltic material approach 45km and exceed that figure in total. Rivers deposit alot of material in their deltic fans.
I didn't research this, so perhaps I'll be corrected, but that freshman geo course taught that many oil deposits are found in these deltic areas because of the accumulation of organic materials that are capped by deposited sediments.
I'll have to study on the root problem so no comment there yet.
As to the last link I have no problem with the info,as old as it is. It is probably accurate as far as it goes because I'm pretty sure that geologic mapping of rock layers in North America was probably well under way by then. Another research topic for me there. And as to its interpretation vis-a-vis a global Flood I really don't have a problem. The area reresents a large inundation relative to present, but using conventional geological dating the Silurian/ Carbon Age boundry was about 400 million years ago and while lacking expressed detail of the area involved, the site
Dinosauria On-Line shows the positions of the continental masses at that time. I note that North America was much smaller then and that large land masses existed elsewhere in the world. And even with the large inundation there are still large parcels of North American land in the figures from 1894. I consider this a large but regional influx of the seas then present and far from worldwide.
Rhetorically it is better to know a lot about a few subjects than virtually nothing at all. And far be it from me to steer you from a subject that you have looked at extensively, yet to look at many different situations in their context says more than completely focusing on one. It seems to me that focusing on the Joggins fossils exclusively is a tactic I've seen before. By focusing on one involved or highly technical issue one can try to cast doubt on the whole(polonium halos come to mind).
But again, far be it from me...I look forward to my education on Joggins.
ABB