Register | Sign In


Understanding through Discussion


EvC Forum active members: 59 (9164 total)
4 online now:
Newest Member: ChatGPT
Post Volume: Total: 916,927 Year: 4,184/9,624 Month: 1,055/974 Week: 14/368 Day: 14/11 Hour: 2/1


Thread  Details

Email This Thread
Newer Topic | Older Topic
  
Author Topic:   Data, Information, and all that....
Percy
Member
Posts: 22508
From: New Hampshire
Joined: 12-23-2000
Member Rating: 5.4


Message 237 of 299 (92077)
03-12-2004 1:16 PM


DNA Contains Information
As near as I can tell, DNAunion is arguing that DNA contains information, while everyone else is arguing it does not. If my count of the protagonists is accurate, then the number on one side has just doubled.
Shannon information isn't particularly restrictive. If a system can be envisioned as sending the symbols of a set across a communications channel, then information is being communicated. In the case of DNA this isn't particularly difficult, and in fact there are any number of ways that genetic systems can be envisioned in this way.
In Message 192 Peter quoted from a technical paper:
J Theor Biol. 1990 Nov 21;147(2):235-54. Related Articles, Links
On the validity of Shannon-information calculations for molecular biological sequences.
Hariri A, Weber B, Olmsted J 3rd.
Department of Chemistry and Biochemistry, California State University, Fullerton 92634.
The usefulness of information-theoretic measures of the Shannon-Weaver type, when applied to molecular biological systems such as DNA or protein sequences, has been critically evaluated. It is shown that entropy can be re-expressed in dimensionless terms, thereby making it commensurate with information. Further, we have identified processes in which entropy S and information H change in opposite directions. These processes of opposing signs for delta S and delta H demonstrate that while the Second Law of Thermodynamics mandates that entropy always increases, it places no such restrictions on changes in information. Additionally, we have developed equations permitting information calculations, incorporating conditional occurrence probabilities, on DNA and protein sequences. When the results of such calculations are compared for sequences of various general types, there are no informational content patterns. We conclude that information-theoretic calculations of the present level of sophistication do not provide any useful insights into molecular biological sequences.
This is somewhat ambiguous, but I believe that the meaning of, "compared for sequences of various general types," is a search for patterns generally associated with artificial information, the kind we store on our computers and send across the Internet. That they found nothing of this nature does not lead to the conclusion that DNA doesn't contain information. It only means that the information in DNA does not exhibit the patterns typical in the artificial information we're familiar with. In other words, the symbols of DNA information do not correspond to any encoding system that their algorithms were capable of detecting, which is what is meant by, "present level of sophistication".
On the other hand, it appears to me, as it has appeared to most others, that DNAunion's quotes of uses of the term "information" in a biological context do not refer to Shannon information, i.e., are not using the term in an information theoretic context. While the context of the article *is* technical, the topic isn't information theory or even related to information theory, and their use of the term "information" is casual and everyday.
I have seen hints at the more familiar issues that discussions with Creationists about information take. Creationists usually argue that information can only be created by intelligence. This is, of course, untrue.
--Percy
[Delete duplicate title and misspelling. --Percy]
[This message has been edited by Percy, 03-12-2004]

Replies to this message:
 Message 238 by Loudmouth, posted 03-12-2004 1:39 PM Percy has not replied

Percy
Member
Posts: 22508
From: New Hampshire
Joined: 12-23-2000
Member Rating: 5.4


Message 241 of 299 (92100)
03-12-2004 4:24 PM
Reply to: Message 239 by MrHambre
03-12-2004 3:37 PM


Re: Creationist in the Closet
The Creationist who accepts a natural origin of species but a miraculous origin of life has neither theological nor scientific support. But this species of Creationist can be a comfort since their mere presence acts as counterpoint to those Creationists who assign evolutionists a sinister motive for wanting to keep biogenesis and abiogenesis separate.
--Percy
[text=wheat][Wordsmithed 1st sentence. --Percy][/text]
[This message has been edited by Percy, 03-12-2004]

This message is a reply to:
 Message 239 by MrHambre, posted 03-12-2004 3:37 PM MrHambre has not replied

Replies to this message:
 Message 242 by RAZD, posted 03-16-2004 1:02 AM Percy has not replied

Percy
Member
Posts: 22508
From: New Hampshire
Joined: 12-23-2000
Member Rating: 5.4


Message 248 of 299 (92894)
03-17-2004 7:43 AM
Reply to: Message 247 by Peter
03-17-2004 4:35 AM


Peter writes:
IF on the other hand, you are trying to claim that cells are
programmed to do what they do, and that the DNA sequences
are more like machine code ... that's where I disagree.
I have to agree that cells are not programmed, if "programmed" in any way implies a sapient entity. But there does seem to be a legitimate analogy to be drawn between DNA at work and computer programs at work.
--Percy

This message is a reply to:
 Message 247 by Peter, posted 03-17-2004 4:35 AM Peter has replied

Replies to this message:
 Message 249 by Peter, posted 03-18-2004 7:21 AM Percy has replied

Percy
Member
Posts: 22508
From: New Hampshire
Joined: 12-23-2000
Member Rating: 5.4


Message 267 of 299 (94253)
03-23-2004 8:21 PM
Reply to: Message 249 by Peter
03-18-2004 7:21 AM


Peter writes:
Even then it's not the DNA sequence alone ... the DNA sequence is more like the data tables that a program might use.
I think one can draw many appropriate analogies between computers and DNA, and the one you suggest here has nothing more to recommend it than any other. Consider a Turing machine, the ultimate confusion of program and data. Where one decides to draw the boundary between program and data, while not entirely arbitrary, has few constraints.
--Percy

This message is a reply to:
 Message 249 by Peter, posted 03-18-2004 7:21 AM Peter has replied

Replies to this message:
 Message 279 by Peter, posted 03-25-2004 1:31 AM Percy has replied

Percy
Member
Posts: 22508
From: New Hampshire
Joined: 12-23-2000
Member Rating: 5.4


Message 294 of 299 (94685)
03-25-2004 11:07 AM
Reply to: Message 279 by Peter
03-25-2004 1:31 AM


The Program/Data Distinction
Peter writes:
program/data distintion is quite straight forward ....
You can flip your interpretation of program and data as easily as that famous optical illusion of the goblets that morph into faces. Consider a microcoded machine. Is the top level program really a program, or is it data interpreted by the microcode? Or is the microcode just data driving a state machine? Is the offset field of a memory access instruction just part of the instruction, or is it data?
data doesn't perform any operations, program does.
It isn't quite this simple. A program doesn't perform any operations either. Both program and data sit in memory. Both the program and the data control the operations the machine performs. Where you draw the line between program and data is not unambiguous.
One can tighten up the definitions and define program as those elements within memory that can potentially be referenced (in a correctly operating program) by the machine's program counter, but I can write a program that writes program instructions to memory and then transfer control to that memory. Did I write data? Or program?
Or I can purposefully place an illegal instruction, say 0, in memory in order to generate an illegal instruction trap. Is the 0 data? Or program?
What about jump tables? Are they data or program?
To me the question about what parts of genetic processes correspond to which parts of computers is a fluid argument. There are any number of ways in which the analogy can be drawn. The DNA can be considered data or program, any which way you like. I'm all for any analogy with strong explanatory power, but just because one analogy "works" doesn't mean there can't be other analogies that also "work".
--Percy

This message is a reply to:
 Message 279 by Peter, posted 03-25-2004 1:31 AM Peter has seen this message but not replied

Newer Topic | Older Topic
Jump to:


Copyright 2001-2023 by EvC Forum, All Rights Reserved

™ Version 4.2
Innovative software from Qwixotic © 2024