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Author Topic:   Evolution Requires Reduction in Genetic Diversity
Denisova
Member (Idle past 3246 days)
Posts: 96
From: The Earth Clod....
Joined: 05-10-2015


Message 584 of 1034 (758346)
05-24-2015 8:13 AM
Reply to: Message 581 by Faith
05-24-2015 7:33 AM


Re: Causes of loss of ability to interbreed ("speciation")
Oh it isn't that there aren't adaptations but my argument is that this is far from the major cause of change claimed by the ToE. Peppered moths and pocket mice are the only examples I can think of and they don't form permanent new subpopulations, they alternate according to the environment. As I've been arguing, which you may not have noticed, such famous examples of adaptation as Darwin's finches more likely formed through mere migration, or random selection of alleles, than in response to the environment.
You better start to read Darwin before starting this - I am sorry to put it this way but your attitude is getting terrible annoying here - TATTLING and misrepresenting of the things he wrote. Here you go: http://darwin-online.org.uk/content/frameset?viewtype=tex....
Darwin described very PAINSTAKINGLY and in TERRIBLE detail how the phenotype of the finches responded to the different ENVIRONMENTAL conditions.
BECAUSE when populations of animals migrate, they move into ANOTHER ENVIRONMENT with different conditions and selective pressure to cope with. Hence, finches that flew from one island to another were found to adapt to the conditions over there. Other food sources but lacking the ones in their former homeland. And adapting they did. Darwin painstakingly noted how the different forms of beaks perfectly match the different food sources the distinct finch species thrived on.
This kind of field observations and even experiments on the effects of natural selection count into the the hundreds of thousands - and I think I do not exaggerate.

This message is a reply to:
 Message 581 by Faith, posted 05-24-2015 7:33 AM Faith has not replied

  
Denisova
Member (Idle past 3246 days)
Posts: 96
From: The Earth Clod....
Joined: 05-10-2015


(1)
Message 587 of 1034 (758349)
05-24-2015 8:24 AM
Reply to: Message 582 by Faith
05-24-2015 7:41 AM


Re: Causes of loss of ability to interbreed ("speciation")
No, I'm thinking through the realities that the ToE relegates to assumptions. The ToE says natural selection so everybody assumes natural selection whether it's involved or not. And speaking of evidence let me know when you have some for your hypothetical mutations.
PARDON???????
  • Lenski's experiment
  • DOZENS of other experiments on bacteria, involving, FOR INSTANCE, immunity against antibiotics
  • DOZENS of experiments on bugs gaining immunity against pesticides
  • experiments on beetles - sexually reproducing animals
  • experiments on fruit flies - sexually reproducing animals
  • experiments on yeast
  • genetic studies on Dachshunds and other animal breeds.
Explain to me, because it is getting interesting to know how this kind of psychology works, how you just dodge ENDLESS requests for addressing SERIES of points and questions and, without a blink of the eye, just "la, la, la, f*ck you, didn't read those" then manage to write:
Faith writes:
And speaking of evidence let me know when you have some for your hypothetical mutations.
It is really breathtaking.
Edited by Denisova, : No reason given.

This message is a reply to:
 Message 582 by Faith, posted 05-24-2015 7:41 AM Faith has not replied

  
Denisova
Member (Idle past 3246 days)
Posts: 96
From: The Earth Clod....
Joined: 05-10-2015


Message 588 of 1034 (758350)
05-24-2015 8:28 AM
Reply to: Message 586 by Admin
05-24-2015 8:24 AM


Re: Moderator Introduced Definitions
Percy,
AGAIN I ask you: is it normal in these EvC forum to just not answer questions and points made?
Unfortunately the affairs here are not very different from the situation on Topix.
It's all dodging, ducking and evading here as well.
I have asked Faith several questions and made numerous points and ALL of them still need to be addressed.
And she STILL makes a lot of propositions without any shred of evidence. She even found something on that: Message 488,
quote:
No, because the scientific literature is in thrall to the evolutionist paradigm and assumes the opposite. Assumes I say, it is not evidenced, it's an interpretation imposed on all the data.
What the hell am I doing here on this forum.
There is no debate.
Edited by Denisova, : No reason given.

This message is a reply to:
 Message 586 by Admin, posted 05-24-2015 8:24 AM Admin has replied

Replies to this message:
 Message 592 by herebedragons, posted 05-24-2015 9:40 AM Denisova has replied
 Message 594 by NoNukes, posted 05-24-2015 10:30 AM Denisova has replied
 Message 614 by Admin, posted 05-25-2015 8:32 AM Denisova has not replied

  
Denisova
Member (Idle past 3246 days)
Posts: 96
From: The Earth Clod....
Joined: 05-10-2015


Message 595 of 1034 (758366)
05-24-2015 2:14 PM
Reply to: Message 592 by herebedragons
05-24-2015 9:40 AM


Re: Moderator Introduced Definitions
You have probably noticed that the number of creationists that frequent these discussion boards has declined considerably. They seem to all have retreated to their own forums such as Evolution Fairytale Forum. I felt the same way as you do at one time and spent some time debating over there. The quality of debate is MUCH worse over there.
Well, not quite, I've been here just for two weeks now, a bit too short to spot such decline.
Quite informative I must say.
It depicts a rather deplorable state of creationism I must say.
I think we indeed should discuss topics that are still interesting to debate.
I just peeked around on "Evolution Fairytale Forum".
After just 5 minutes I caught a terrible headache due to the claptrap there by creationists.
Bronze age mythology dwellers, lost in the 21st century, trying desperately to get a grasp on reality...

This message is a reply to:
 Message 592 by herebedragons, posted 05-24-2015 9:40 AM herebedragons has not replied

  
Denisova
Member (Idle past 3246 days)
Posts: 96
From: The Earth Clod....
Joined: 05-10-2015


Message 596 of 1034 (758368)
05-24-2015 2:28 PM
Reply to: Message 594 by NoNukes
05-24-2015 10:30 AM


Re: Moderator Introduced Definitions
You have to accept the limitations of the other side. Faith is doing this alone using a hypothesis she has concocted. She is not a creationist biologist. So there are limits in the quality of her answers.
I do not mind people not being professional biologists.
I do not even mind the quality of her answer with respect to this lack of professional proficiency.
As a matter of fact, to me the person is always more important than his or her opinions.
But I do bother about honesty.
If Faith would say that there is no evidence of her claims made but she wishes to still elaborate on her propositions to work it out where it leads to, I would gladly join that effort.
But when I get comments like "no evidence" IN RETURN of bringing in evidence continuously, then it's "Holy Moses" time for me.
But OK I will temper a little bit and change my debate intentions.

This message is a reply to:
 Message 594 by NoNukes, posted 05-24-2015 10:30 AM NoNukes has seen this message but not replied

  
Denisova
Member (Idle past 3246 days)
Posts: 96
From: The Earth Clod....
Joined: 05-10-2015


Message 607 of 1034 (758402)
05-25-2015 7:36 AM
Reply to: Message 600 by Faith
05-24-2015 6:01 PM


Re: Causes of loss of ability to interbreed ("speciation")
Rather than address the arguments? That's the best you can do? Blech.
PARDON????
Did you say "rather than address my arguments?"
See post Message 1758349[/mid].
Where did you address those then?

This message is a reply to:
 Message 600 by Faith, posted 05-24-2015 6:01 PM Faith has not replied

  
Denisova
Member (Idle past 3246 days)
Posts: 96
From: The Earth Clod....
Joined: 05-10-2015


Message 609 of 1034 (758404)
05-25-2015 7:53 AM
Reply to: Message 602 by herebedragons
05-24-2015 6:11 PM


Re: Pseudogenes caused by bottleneck
I just did all that work in Message 598 to demonstrate what inbreeding actually does and how allele frequency doesn't change by inbreeding alone. I guess you need to explain to me how inbreeding can create new allele frequencies. All you have done so far is to say that it does but you don't know how.
HBD, if I'm not wrong, inbreeding also "artificially" declines the population size by closely related individuals mating among their own kin alone. Isn't it that under such conditions of a small population, the effects of genetic drift are stronger? After all, genetic drift may cause gene variants to disappear completely and thereby reduce genetic variation. If so, did you include this factor into your calculations in post 598?

This message is a reply to:
 Message 602 by herebedragons, posted 05-24-2015 6:11 PM herebedragons has replied

Replies to this message:
 Message 616 by herebedragons, posted 05-25-2015 9:39 AM Denisova has not replied

  
Denisova
Member (Idle past 3246 days)
Posts: 96
From: The Earth Clod....
Joined: 05-10-2015


Message 622 of 1034 (758449)
05-26-2015 6:36 AM
Reply to: Message 620 by Faith
05-25-2015 8:51 PM


Re: Causes of loss of ability to interbreed ("speciation")
And please get this straight. I've said it for years and years by now. It's the NEW GENE FREQUENCIES brought about by the population split that CAUSE new traits, but it takes the recombinations through inbreeding of the new subpopulation to BRING OUT the new phenotypes. Even this isn't of major importance, but it's true: you won't SEE the new traits until after a period of inbreeding.
THIS GETS SO FRUSTRATING. Maybe I'll eventually read the rest of your post and all the others that are backed up but Why Bother keeps passing through my mind.
This is of major importance because it's wrong.
As shown extensively in many posts last 2 weeks - and I am only around here for that period, let alone previous attempts - a population split cannot bring a different GENE frequency but only a different ALLELE frequency. In the population of the very same (ancestral) species there are not much differences in genes. Unless it's a typo, it is a flaw. Because a different gene frequency implies that one breed must have taken with them some genes other breed lost throughout the split event. That can't be.
And it is not true that you won't see new traits until after a period of inbreeding.
MOSTLY, the accumulation of new traits CAUSES the eventual split.
But the most severe flaw is just skipping an abundance of observations both in the field and the lab on genetic innovation by means of Darwinist evolution.
It is indeed frustrating - if I weren't used to it when debating creationists - to experience your posts just being ignored. Why Bother indeed is what crosses my mind.
Edited by Denisova, : No reason given.

This message is a reply to:
 Message 620 by Faith, posted 05-25-2015 8:51 PM Faith has not replied

Replies to this message:
 Message 623 by Admin, posted 05-26-2015 7:10 AM Denisova has replied

  
Denisova
Member (Idle past 3246 days)
Posts: 96
From: The Earth Clod....
Joined: 05-10-2015


Message 626 of 1034 (758453)
05-26-2015 8:35 AM
Reply to: Message 623 by Admin
05-26-2015 7:10 AM


Re: Causes of loss of ability to interbreed ("speciation")
Just a little while back in Message 549, and my own readings confirm this, HBD explained that the term gene frequency and allele frequency are often used interchangeably when it is allele frequency that is actually meant. I don't think Faith meant to imply that the it was actual genes whose frequencies were changing.
If something is a receipt for misunderstanding, it will be blurring of concepts, using them interchangeable when they shouldn't. The very concept of an allele is exactly to indicate that different versions of the same gene may exist. That implies the gene itself persists among its versions.
I could live with it when all contributors to this thread would agree on "gene frequency may be used as a synonym for allele frequency". But imagine when a newcomer will join.
So I propose to designate it "allele frequency" when such was meant.
But, and somebody please correct me if I'm wrong, I believe individuals in a population can differ as to which genes they have and how many. Some individuals may have different numbers of copies of some genes, or even possess genes other members do not. But I don't believe this is what Faith is talking about.
I already pointed that out to Faith but these instances of individuals of the same species having different genes are rather rare. Because too much of those and you have different species. But Faith is thinking that many genes (not alleles) of the original genome from the creation moment are silenced and became junk DNA. That is impossible because that would imply that extant humans supposedly differ thousands of genes from the original ancestral humans. That actually implies a complete other species.

This message is a reply to:
 Message 623 by Admin, posted 05-26-2015 7:10 AM Admin has replied

Replies to this message:
 Message 627 by Admin, posted 05-26-2015 9:49 AM Denisova has not replied

  
Denisova
Member (Idle past 3246 days)
Posts: 96
From: The Earth Clod....
Joined: 05-10-2015


Message 632 of 1034 (758474)
05-26-2015 6:16 PM
Reply to: Message 628 by herebedragons
05-26-2015 9:50 AM


Re: Causes of loss of ability to interbreed ("speciation")
This is really a huge subject and maybe we could spin this off as a separate thread?
Indeed it is.
I don't feel it to be a separate spin off issue because it addresses the points made by Faith directly.
The questions, I think, to be posed here are:
  1. is changing song caused by ecological isolation or is it working on its own (as well)? Is it just the icing on the cake of ecological isolation and/or can it act on its own, for instance due to genetic drift or in the same way human languages change over time and slowly losing mutual intelligibility?
  2. When reproductive isolation occurs, does this speed up genetic divergence between the two new sister species (due to the loss of genetic flow)?
  3. would the fact that postzygotic factors usually play little role in speciation not be explained by the observation that it's mostly and merely the result of ecological isolation? In that scenario hybrid incompatibility is the genetic and phenotype result of ecological isolation and not to be deemed a separate factor after all and different pollinators, different breeding patterns/timing, different mating habits (bird songs/displays) are just its manifestation within the reproductive realm.
Maybe some good starters.
Edited by Denisova, : No reason given.

This message is a reply to:
 Message 628 by herebedragons, posted 05-26-2015 9:50 AM herebedragons has not replied

  
Denisova
Member (Idle past 3246 days)
Posts: 96
From: The Earth Clod....
Joined: 05-10-2015


Message 633 of 1034 (758475)
05-26-2015 7:05 PM
Reply to: Message 630 by Taq
05-26-2015 4:34 PM


Re: Moderator Introduced Definitions
I disagree that "junk DNA" is a perfect term. It is not specific enough. I will withdraw the statement that the majority has a "function," function has implications that I don't really mean, and which depends on what is meant by "function." For example, does spacer DNA have a function? Is it a "selectable function?" Maybe not, but could it just be clipped out? Probably not, separation of genes does affect expression and having two genes back to back may cause problems with transcription. Is that a function?
If the space were important then we would see selection against indel events that would be detectable.
At the same time, that is a rather rudimentary function akin to vestigial organs or the actual junk in your kitchen.
ifthespacewereimportantthenwewouldseeselectionagainstindeleventsthatwouldbedetectableatthesame timethatisaratherrudimentaryfunctionakintovestigialorgansortheactualjunkinyourkitchen
Now what would happen when we remove punctuation?
I think it would cause a text to be illegible and prone to causing communication errors. Especially when a whole book was written and edited without.
Are indels only affecting spacer DNA then?
No they don't.
When an indel affects the spacer DNA, causing troubles in transciption of the adjacent genes, would this bring deleterious effects and thus would it be trigger selective effects?
Most likely it would.
DNA takes a tremendous amount of resources? Since when? I don't know for sure, but I wouldn't be surprised if the ATP turnover in one muscle cell from one contraction was equal to all of the ATP turnover needed to replicate the genome of that cell. The problem for the bladderwort was the availability of phosphates to make the ATP, not the energy needed to replicate the genome.
One of the interesting outcomes of the ENCODE project was the observation that at least 70% of the human DNA actually is transcribed. It made them draw the flawed conclusion that these 70% of human DNA also must be "functional". That's wrong. But STILL the fact stands that 70% of our DNA is transcribed. And transcription costs energy. Especially when it happens all the time in all of the organism's cells.
Moreover, most proteins are, often extremely, redundant. For instance, cytochrome C consists of a chain of about 100-104 amino acids. As a consequence, it has been shown that the human cytochrome C protein works in yeast (a unicellular organism) that had its own native cytochrome C gene deleted, even though yeast cytochrome C differs from human cytochrome C over 40% of the protein. Furthermore, extensive genetic analysis of cytochrome C has demonstrated that the majority of the protein sequence is unnecessary for its function in vivo. Only about a third of the 100 amino acids in cytochrome C are necessary to specify its function. Most of the amino acids in cytochrome C are therefore also hypervariable.
Now this applies to all proteins and it means that when, for instance, cytochrome C is produced in the cell, at least two-third of the work is just superfluously done. That will cost a lot of energy.
As a matter of fact, prokaryote genomes contain much less junk. For some reason they manage to get lost of their genetic junk. Maybe they need so. Because one of the major differences between prokaryotes and eukaryotes is the latter have a far better net energy balance due to their chloroplasts and mitochondria. They can afford to sustain a lot of genetic junk and protein redundancy.
And a lot of redundancy and junk eukaryotes drag around with them indeed. The human genome size is 3.2 Gb large and already known for its junk. But what about the plant Fritillaria assyrica (130 Gb) or Paris japonica (150 Gb). Or the marbled lungfish (Protopterus aethiopicus, 130 Gb). To name a few. You hardly can argue these species are more complex than humans, to account for their larger genomes. It seems that the genome size of many eukaryotes does not particularly appear relate to genetic complexity. See The Complexity of Eukaryotic Genomes - The Cell - NCBI Bookshelf, particularly Figure 4.1, Genome size - The Cell - NCBI Bookshelf.
Which raises the question why eukaryotes do not get rid of this junk and redundancy. Because after all, it costs energy and resources. When such phenomena are that persistent, there must be an evolutionary advantage for it. Otherwise all that junk would have gotten rid of by selection, like in prokaryotes.
That would be an interesting thing to elaborate on i think.
Edited by Denisova, : No reason given.

This message is a reply to:
 Message 630 by Taq, posted 05-26-2015 4:34 PM Taq has replied

Replies to this message:
 Message 653 by Taq, posted 05-28-2015 6:03 PM Denisova has replied

  
Denisova
Member (Idle past 3246 days)
Posts: 96
From: The Earth Clod....
Joined: 05-10-2015


(1)
Message 634 of 1034 (758478)
05-26-2015 7:20 PM
Reply to: Message 631 by jar
05-26-2015 6:07 PM


Re: physical separation and sexual compatibility
The evidence seems to show that Homo Neanderthal and Homo Sapiens sapiens were isolated for tens if not hundreds of thousands of years yet also shows that the two distinct species could and did interbreed.
Is this evidence that isolation alone is not sufficient to prevent interbreeding even when dealing with two or more closely related but separate species?
I think you also have to account for the time factor.
The first "true Neanderthals" appeared between 200,000 and 250,000 years ago in Eurasia and most probably descended from Homo Heidelbergensis. They never were in Africa.
Homo sapiens' cradle is Africa and only some 60,000 years ago one of its branches for the first time migrated out of the continent. It also has been estimated that the last Neanderthal gene flow into early ancestors of Europeans occurred 47,000—65,000 years BC. That matches the date of first Homo sapiens first migration out of Africa. Comparison with different Neanderthal specimens found the most likely region of interbreeding to be the Middle East. That's indeed the first place you encounter when leaving Africa.
Hence it seems that Neanderthals and Sapiens first took their time to diverge in separate regions, only later to meet each other.

This message is a reply to:
 Message 631 by jar, posted 05-26-2015 6:07 PM jar has replied

Replies to this message:
 Message 635 by jar, posted 05-26-2015 7:24 PM Denisova has replied

  
Denisova
Member (Idle past 3246 days)
Posts: 96
From: The Earth Clod....
Joined: 05-10-2015


Message 637 of 1034 (758496)
05-27-2015 7:23 AM
Reply to: Message 635 by jar
05-26-2015 7:24 PM


Re: physical separation and sexual compatibility
Yet still were not just capable of interbreeding but actually did breed together.
Yes but your initial question was:
jar writes:
Is this evidence that isolation alone is not sufficient to prevent interbreeding even when dealing with two or more closely related but separate species?
Which is answered I think: the previous 140,000 years of ecological and geographical isolation before their encounter in the Middle East between the H. sapiens and H. Neanderthal populations apparently did not suffice to establish reproductive isolation.
One could argue that 140,000 years represent, evolutionary spoken, a rather short time span.
Furthermore, there is the question whether Neanderthals and Sapiens were separate species altogether. When they were able to interbreed, they weren't according to one of the most important criteria for speciation: reproductive isolation.
You may read this article about the issue: Were Neanderthals a different species? - Genetic Literacy Project, where Svante Pbo explains that the male hybrids of Neanderthals and Sapiens were infertile, like mules, and that we owe our Neanderthal genes to hybrid females - which brings David Reich of Harvard Medical School to the conclusion that we and Neanderthals were at the edge of biological compatibility. which subsequently made Fred Spoor conclude This underlines that modern humans and Neanderthals are indeed different species.
To my opinion two populations are still belonging to the same species when there is still some gene flow between them - even when only through the maternal line.
Edited by Denisova, : No reason given.

This message is a reply to:
 Message 635 by jar, posted 05-26-2015 7:24 PM jar has replied

Replies to this message:
 Message 638 by jar, posted 05-27-2015 8:34 AM Denisova has replied

  
Denisova
Member (Idle past 3246 days)
Posts: 96
From: The Earth Clod....
Joined: 05-10-2015


Message 639 of 1034 (758500)
05-27-2015 9:00 AM
Reply to: Message 638 by jar
05-27-2015 8:34 AM


Re: physical separation and sexual compatibility
So is 140,000 a longer period of time than the 4400 years or so since the claimed Biblical Flood or even the 6000 years or so since the claimed Fall?
Indeed it is but as you may have noticed I am not of the biblical branch pertaining explanations of the natural world. A bit difficult to grasp your point at this moment.

This message is a reply to:
 Message 638 by jar, posted 05-27-2015 8:34 AM jar has replied

Replies to this message:
 Message 641 by jar, posted 05-27-2015 9:18 AM Denisova has replied

  
Denisova
Member (Idle past 3246 days)
Posts: 96
From: The Earth Clod....
Joined: 05-10-2015


Message 642 of 1034 (758505)
05-27-2015 10:59 AM
Reply to: Message 641 by jar
05-27-2015 9:18 AM


Re: physical separation and sexual compatibility
Ah I think I caught up....
BTW don't forget Homo Denisova.
Or Homo Floriensis.
Or, for that matter, Homo erectus, who manufactured and applied tools and used fire.
Noah's family took in the weirdest of lodgers...
Edited by Denisova, : No reason given.

This message is a reply to:
 Message 641 by jar, posted 05-27-2015 9:18 AM jar has not replied

Replies to this message:
 Message 645 by ringo, posted 05-27-2015 4:25 PM Denisova has replied

  
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