this is what makes Popper's falsification criterion so powerful. Unfortunately, this is only what happens in theory. In the practice of science, a scientist will almost always try to support his theory, not the contrary.
well...some do, I'm sure. And others will read the data and check it out for true or false, others will pick it apart and find the holes where it doesn't match up, still others will do meta-analysis and come up with data you didn't know you had.
That's why peer review is so terribly, terribly important.
The best scientists though work from the data, through to a hypothesis and finally arrive at a theory. If you're setting out to specifically prove your pet theory (lesser meaning here) true, you'll probably not end up doing good science.
It is only apparent it 'already had' only through a naturalistic mindset. But Darwin wasn't a naturalist at this time, and so this is why his assumption is not that special creation isn't an option, But rather that the small changes he saw in nature could accumulate to explain the vast diversity he say in the animal kingdom, and so this was a viable alternative to the current 'special creation' idea at the time.
If something's not apparent because you're not ready or willing to look for it, does that mean it's not apparent, or that you're not ready or willing to look for it?
Seriously though, if he
wasn't a naturalist until he looked at the evidence, and even through the bias of a creationist' mindset saw "the truth" (yes, we're arguing about that, forgive me) then that must have been some pretty powerful evidence.
I'm not sure if he thought man and monkey had a common ancestor - I do know he said right there in the book (I have the penguin edition from 1985, apparently) that he doesn't know the origin of life itself, and even if they didn't, it doesn't stop evolution from having occured.
And finally, you may have something on the age of the Earth in that I'm reasonably convinced that learned men of the time already knew the Earth was older than 6000 years - but then you're missing what I mean in that evolution had occured even before we knew what it was. the timescale helped, but isn't a barrier (it just reinforces the old-Earth view gleaned from the evidence).