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Author Topic:   Evolution Requires Reduction in Genetic Diversity
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Message 870 of 1034 (759458)
06-11-2015 2:58 PM
Reply to: Message 862 by Faith
06-11-2015 12:14 PM


Re: HBD:
Faith writes:
What would greatly help these days is being a lot less subjected to advice, rules and other comments.
I haven't been providing you "advice, rules and other comments."
I've been requesting clarification of some points, and I've been providing clarification of some points made by others. Yes, most of this is related to you, but I do the same with everyone, as I did with NoNukes earlier today, and with HBD earlier in the discussion.
In many messages people complain that they can't make sense of what you're saying, and you keep complaining that no one understands what you're saying, so I'm trying to help discussion along by asking you to provide clarification about some of your key points.
Also, you can't dismiss evidence because it is too complex to understand, then complain when someone else merely says it's complex because they know that if they describe the evidence you'll complain it's too complex. This makes no sense. Please work to understand the evidence. No one has ever judged a debate saying, "Because side A couldn't understand the evidence and arguments from side B, side A wins."
Edited by Admin, : Grammar.

--Percy
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Message 880 of 1034 (759501)
06-12-2015 8:37 AM
Reply to: Message 874 by Faith
06-11-2015 11:37 PM


Re: Evidence of adaptation (but mutation?}
Hi Faith,
Since it might not have been obvious, let me explain that the quotes HBD provided in his Message 876 were his attempt to answer your question about why he posted the information and how it was relevant to the topic. The thread history revealed in the quotes shows that he posted the information about that specific example in response to your assertion that his claims were "totally hypothetical." His example was one of adaptation through mutation, and it is relevant because it is evidence against two of your contentions:
  • Mutations do not produce significant traits.
  • Adaptation through selection is rare.

--Percy
EvC Forum Director

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Message 881 of 1034 (759503)
06-12-2015 9:08 AM
Reply to: Message 860 by Faith
06-11-2015 12:01 PM


Moderator Ruling
Faith writes:
In this case it must be natural selection, different versions showing up and the adapted one surviving, but nothing was said to prove it was a mutation.
I didn't originally reply to this because JonF and HBD both responded, but you haven't replied to them. HBD explained in Message 823 that in the Italian population of Arabidopsis thaliana that its CBF-2 gene contained a "deletion of 13 nucleotides which resulted in a stop codon and a truncated protein." This is the kind of allelic difference that simple mutations produce.
I assume you prefer to believe that in the absence of observations of the original mutation actually happening that the genetic difference between the two Arabidopsis thaliana population was there from the beginning, but we know that the copying of genetic material that occurs during reproduction is not perfect and that mutations are an inevitable byproduct of all reproductive events. You've avoided all arguments that mutations must have happened, for instance, the argument that the human genome (and indeed probably the genomes all species everywhere) contains far more diversity than could have originated from Noah's small family, unless mutations occurred (and for a much longer period than the 4500 years since the flood).
You cannot continue insisting that something hasn't been proved simply because you refuse to discuss it, so I'm ruling that you have to address the issue of the origin of existing diversity from a small family group for humans and from 1 or 7 pairs for the rest of life. Until you do then I'm ruling that mutations explain genetic differences and can have significant phenotypic effects.
Also, you've been ignoring my requests for clarification, so to help discussion move ahead, and until you actually do respond with clarifications, participants should assume this about your postion:
  • Speciation as defined by the science of biology is impossible.
There were other points on which I was seeking clarification, but one at a time.

--Percy
EvC Forum Director

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Message 883 of 1034 (759520)
06-12-2015 2:02 PM
Reply to: Message 882 by Faith
06-12-2015 1:38 PM


Re: Moderator Clarification Request: speciation, mutations
Faith writes:
Yes as far as the event goes, no to the ToE interpretation of it:
Speciation is a term given to an event that does in fact occur and is in fact characterized by inability to interbreed. My argument is that the new species thus formed can't be the basis for further evolution because it lacks sufficient genetic diversity.
Well, this is sure to receive a lot of comment. Let me rephrase so you can confirm the correct interpretation:
  • A new species can form from an existing species, but only once, and once that speciation event occurs there can be no further speciation events for either the new species or the original species.
Spreading through the population is the same thing as forming a new subspecies by a population split: spreading requires the loss of competing alleles or loss of genetic diversity just as I keep saying all the "subtractive" or "selection" processes do.
I doubt that mutations contribute much in the way of functioning alleles, but IF THEY DO, which is the concession I always try to make here, then they are NOT "any less able to cause significant phenotypic change than new allele combinations of existing alleles" -- the effect should be the same.
This needs to be boiled down into something concise, so again let me rephrase so you can confirm the correct interpretation:
  • Mutations are unlikely to contribute functional genetic material.
  • But any functional genetic material contributed by mutations can have the same degree of phenotypic impact as new allele combinations.
Please confirm or correct the italicized bullet points.

--Percy
EvC Forum Director

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Replies to this message:
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Message 889 of 1034 (759527)
06-12-2015 4:22 PM
Reply to: Message 886 by Faith
06-12-2015 2:22 PM


Moderator Clarification Request
Faith writes:
How is that selective pressure "demonstrated" as you claim it is though? I don't see any need for selective pressure at all. Why wouldn't the new allele frequencies created by the initial formation of the band of migrants be enough to explain it?
This is another of your contradictory positions that I think puzzles many people. You use breeding, the epitome of selective pressures, as an example of how evolution really works, then deny that selective pressures play much of a role in evolution. Could you resolve this apparent contradiction please?

--Percy
EvC Forum Director

This message is a reply to:
 Message 886 by Faith, posted 06-12-2015 2:22 PM Faith has replied

Replies to this message:
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Message 890 of 1034 (759529)
06-12-2015 4:29 PM
Reply to: Message 885 by NoNukes
06-12-2015 2:19 PM


Re: Moderator Clarification Request: speciation, mutations
NoNukes writes:
A new species can form from an existing species, but only once, and once that speciation event occurs there can be no further speciation events for either the new species or the original species.
I don't see a claim from Faith about the original species.
Yes, you're right, not explicitly, but once you start generalizing what she said (e.g., a population splits into two subpopulations that each have only a subset of the alleles of the original population, etc.) then there's no way to know which is the "original" species. I kept my statement simple and inclusive of the implications of Faith's original statement.

--Percy
EvC Forum Director

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Message 912 of 1034 (759666)
06-14-2015 8:40 AM
Reply to: Message 899 by mikechell
06-13-2015 9:17 AM


Off-Topic Notice
Some facets of the Biblical flood are on-topic in this thread, such as the resulting genetic bottleneck, but by and large the flood is off-topic.
I am, as always, reading and responding to the messages of this thread in order. I see there's a reply to your message, and I'll address it when I get there.

--Percy
EvC Forum Director

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 Message 899 by mikechell, posted 06-13-2015 9:17 AM mikechell has not replied

  
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Message 913 of 1034 (759668)
06-14-2015 9:21 AM
Reply to: Message 906 by Faith
06-14-2015 3:24 AM


Re: macroevolution not impossible -- it has been observed.
Faith writes:
Admin writes:
This has the potential to create a great deal of confusion as it seems contradictory. How can you accept selection when it involves reduced genetic diversity but reject selection in all other contexts? Why would selection operate differently upon a trait depending upon the genetic process that produced the trait?
What?
It's just one of those ToE just-sos that are pronounced from time to time but aren't really demonstrated, except for truly lethal conditions. The ToE seems to be full of such articles of faith that may or may not hold up.
Again, I'm not trying to debate you, I'm only seeking some clarification. I think most people will have a great deal of difficulty seeing how denying a significant role for selection makes any sense. Splits of populations into small subpopulations occur informally everywhere throughout the civilized world with creatures like dogs, cats, hamsters, cows, sheep, canaries, finches, parrots, goldfish, guppies, angelfish, ants, etc., and in the absence of any selection pressures these small isolated subpopulations never exhibit any significant phenotypic change
Here's a specific example. A family has a community of around 10 or 20 pet gerbils that they maintain over a decade or two, something that is probably incredibly common all across the United States. There's no selection (so only drift could be a factor) and they allow the gerbils to breed randomly, and no significant phenotypic change ever appears. The scenario you insist must have happened in the past never seems to happen in the real world today.
People are seeking some clarification from you about why you think this way. There are actually two significant issues where people don't understand how you can maintain your position:
  • If the forces you've identified (genetic drift, new allele combinations) can produce significant phenotypic change in the absence of selection simply by isolating a small subpopulation, why is this never observed?
  • How can a subpopulation become a genetically new species simply by losing alleles and creating new allele combinations, since all the alleles it does have already exist in the main population? If this happened over and over again in the past, why are there no examples in the real world?

--Percy
EvC Forum Director

This message is a reply to:
 Message 906 by Faith, posted 06-14-2015 3:24 AM Faith has replied

Replies to this message:
 Message 915 by Faith, posted 06-14-2015 12:37 PM Admin has replied

  
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Message 914 of 1034 (759673)
06-14-2015 9:32 AM
Reply to: Message 908 by Faith
06-14-2015 4:03 AM


Re: Increasing genetic diversity by a couple of neutral mutations
Faith writes:
You have long since left your position as Moderator and are deep in the debate whether you want to admit it or not.
My position as moderator does not require me to check my brain at the door. You have expressed opinions that no one can make any sense of, including this moderator, and then you are being alternately reluctant and recalcitrant about providing evidence to support them, preferring instead to merely repeat the opinions. It is my job as moderator to try to move the thread toward a discussion of evidence rather than opinion.
In the case of the message you're replying to, you didn't seem to understand HBD's post, and you also frequently complain that his posts are too technical, so I tried to put it in understandable terms. I was only making HBD's point in simpler terminology. I was not making my own point nor trying to debate you.
Your reply addresses the issue HBD raised far better than your response in Message 827, so I'll let HBD respond.

--Percy
EvC Forum Director

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Message 920 of 1034 (759707)
06-14-2015 3:42 PM
Reply to: Message 915 by Faith
06-14-2015 12:37 PM


Re: macroevolution not impossible -- it has been observed.
Faith writes:
...you...refuse to try to understand what I'm saying.
Everyone is trying very hard to understand you. The arguments you're making do not appear rational or consistent to other people. They're calling this to your attention and you're ignoring them by simply repeating your unsupported opinions and accusing them of not understanding you, which is why I've stepped in. Please stop playing the "no one understands me" card. Instead please try to address the questions and concerns being raised.
  • If the forces you've identified (genetic drift, new allele combinations) can produce significant phenotypic change in the absence of selection simply by isolating a small subpopulation, why is this never observed?
I've given plenty of examples where it's observed.
No you have not. You not only haven't provided plenty of examples, you haven't provided a single one. Unless you can provide evidence of simple isolation of a small subpopulation producing significant phenotypic change in the absence of selection, I'll have to disallow this claim in this thread.
About speciation you say:
There is no such thing as a genetically new species in the sense of macroevolution which speciation supposedly represents.
Okay, I think I can piece together a statement of your position on speciation now:
  • A new species can form from an existing species as long as the existing species possesses sufficient diversity, but the new species will remain genetically compatible with the original species, i.e., the new species will only have alleles already in the main population. This means that although interbreeding remains possible, it doesn't happen for either physical or behavioral reasons.
Is this correct?
If so then this is one route to speciation that I think everyone here can agree with, but it is incredibly uncommon since the ability to interbreed means the production of viable (not sterile) offspring. Lions and tigers can interbreed, but it's hit or miss and the offspring are usually sterile, so lions are tigers are not an example of the kind of speciation you describe. Horses and donkeys can interbreed, but are also not an example for the same reason. I know there are two genetically identical species of wasp that never interbreed because one always mates in the morning and the other in the evening, so there's one example for you.
But the key point is that this is a very uncommon route to speciation, and because it rejects the possibility of genetic change it doesn't explain the allelic diversity we see in life today. For example, the pig is unclean, and so there were only two pigs on the ark. The maximum number of alleles at any loci is therefore 4. But the pig has many loci with more than 4 alleles (according to Nutztierzchtung im Wandel der Zeit (Livestock Breeding Through the Ages) the pig has 14.5 alleles per locus today), so if mutation plays at best a minor role then where did all these additional alleles come from?
This needs to be explained.
Edited by Admin, : Wordsmith last sentence of next to last para.

--Percy
EvC Forum Director

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Message 923 of 1034 (759741)
06-14-2015 8:18 PM
Reply to: Message 922 by Faith
06-14-2015 7:39 PM


Re: Back to HBD's Chart
Hi Faith,
I encourage your efforts at understanding HBD's chart, but I disapprove of your attempt in the opening paragraph to disparage efforts at understanding your views. Please don't abandon responsibility for making your views clear. There's no need to slog through all the posts, but it would be irresponsible if you didn't browse through them and respond to the key points. One reason these discussions are so difficult for you might be because you often, as you are doing again right now, suddenly shift direction, abandoning current threads of discussion and reviving old ones that you abandoned earlier, causing any progress to evaporate.

--Percy
EvC Forum Director

This message is a reply to:
 Message 922 by Faith, posted 06-14-2015 7:39 PM Faith has replied

Replies to this message:
 Message 924 by Faith, posted 06-14-2015 8:21 PM Admin has replied

  
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Message 925 of 1034 (759746)
06-14-2015 9:08 PM
Reply to: Message 924 by Faith
06-14-2015 8:21 PM


Re: Back to HBD's Chart
Faith writes:
Oh I fully intend to try to get through all the posts eventually,...
But that's what you're doing right now, getting to an old post, eventually, after progress and continuity on that subtopic are gone. Please do not let that happen to the current subtopics.

--Percy
EvC Forum Director

This message is a reply to:
 Message 924 by Faith, posted 06-14-2015 8:21 PM Faith has replied

Replies to this message:
 Message 926 by Faith, posted 06-14-2015 9:11 PM Admin has replied

  
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Message 929 of 1034 (759750)
06-14-2015 9:43 PM
Reply to: Message 926 by Faith
06-14-2015 9:11 PM


Re: Back to HBD's Chart
Faith writes:
WHAT "progress and continuity"? All I see is an incredible morass of straw man arguments and really really demented failures of understanding,...
Yes, this is the kind of thing you always say eventually in many threads regardless of who's participating. It greatly hinders discussion and it would be a great help if you would stop.
...and your non-moderator-style blaming it all on me does NOT encourage participation in what is really your own personal viewpoint.
You're the only one engaging in this kind of behavior, and in continual other complaints, and in threats to leave, and in complete melt-downs, so who else is one to blame? You can't engage in all these kinds of misbehaviors and expect moderation to permit them to go by without comment.
This is enough moderation commentary for now. If you have further concerns take them to the Report Discussion Problems Here 4.0 thread.

--Percy
EvC Forum Director

This message is a reply to:
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Message 930 of 1034 (759752)
06-14-2015 9:54 PM


Moderator Request
Please let's keep the focus on the topic.

--Percy
EvC Forum Director

  
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Message 932 of 1034 (759790)
06-15-2015 8:50 AM
Reply to: Message 931 by herebedragons
06-14-2015 11:34 PM


Re: Back to HBD's Chart
herebedragons writes:
Between populations: Population 'A' and 'B' both have a certain amount of genetic diversity. The question the chart addresses is how does the factor in question affect this diversity between these populations. Over time the populations will become increasingly different; that is, diversity will increase. Or maybe they will become more similar and so diversity will decrease. So "between populations" addresses how these factors will affect the differences, or the diversity, between the two populations. A mutation in either population (assuming the exact same mutation does not occur in both populations) will INCREASE the diversity between the populations.
I think it might be more clear if the diversity within a population were referred to simply as diversity, while the diversity between populations were referred to as diversity difference.
Diversity within a population would be measured by factors related to allele frequencies or permutations, etc.
Diversity difference between populations would be measured by alleles shared and not shared, allele combinations shared and not shared, etc.
Mutation will only affect the loci that mutates, not other loci.
I know you're trying to keep it simple, but can't mutations cross loci boundaries? And it might help to be clear that you only mean mutation's direct impact on nucleotide sequences, not the downstream effects, for instance, regulatory genes that turn other genes on and off.

--Percy
EvC Forum Director

This message is a reply to:
 Message 931 by herebedragons, posted 06-14-2015 11:34 PM herebedragons has replied

Replies to this message:
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