That doesn't address the 3D nature of proteins, and folding, etc, which creates even more doubt for me
Woah, step back a little there Sparky!
What exactly do you mean by this statement? How exactly does the formation of polymers using common all-garden chemical bonds which then interact with each other and the surrounding environment in a common all-garden way require a magical input of 'information'? Why is it miraculous, for example that amino acids which don't interact with water in an energetically favourable way will position themselves away from the aqueous environment of the cell and into a more favourable one (like a the inside of a protein structure, or a lipid membrane)?
Oh, and although its' probably a bit late to welcome you to the forum....welcome to the forum.