Too bad this came at the end of this thread. We have been talking at cross purposes.
But in your example of the salamanders, the problem there was that mutation appeared to be assumed to be the explanation for the novel alleles, and nothing in the study proved that pre-existing alleles couldn't account for it.
Although I'm not sure how you can state this so authoritatively since you wouldn't read the article and wouldn't accept my word (and later Equinox's) for what the article contained, you are at least partially correct. Mutation was "assumed" for the creation of novel alleles. Here's the rub, however: there were enough distinct alleles between the subpopulations examined that recombination, genetic mixing, and sequestration of alleles could not account for the divergence. There COULD be epigenetic effects that might account for some of the diversity (i.e., it might not necessarily be due exclusively to mutation), but it most assuredly was NOT due to recombination exclusively, either. Simply reshuffling existing alleles can't explain the genetic diversity. That, of course, leaves mutation, even though the article didn't specifically address mutation. Remember this part?
quote:
Making a long story short, there is sufficient genetic divergence between the two "ends" of the E. eschscholtzii chain to indicate that a) the most distant populations do not simply represent a statistical assortment of existing alleles, and b) genetic diversity has not only not decreased, but has actually increased over the range of the species.
The only way we can get further into the "data" you keep requesting is to dig deeper into the literature and begin discussing things like quantitative trait loci (QTL) studies, which if you think the articles already provided are too technical, are going to be very difficult to digest. I'm happy to give it a whirl, but given past history, I'm not sure we're going to get very far - especially with such a short time remaining in the discussion.