"The truth as you(I) see it" is not necessairly the Truth; never the less, my God wants me to tell/persue the truth as I see it - even if it takes me into a realm where God is, to all appearances, absent. That, however, is not the same as choosing
between God and truth (or choosing between God and Truth) as you might be suggesting.
My God wants me to explore and learn by my
experience. The more I do that, the more I choose Him.