The Significance of the Dover Decision

Religions characteristically rely on the indoctrination of children to perpetuate themselves, which is why I.D. aims at the classrooms, and claims, like other forms of creationism, that the evidence based science taught at present is indoctrination.

Meyer, S. C. DNA and the origin of life: Information, specification and explanation, in Darwinism, Design, & Public Education (Michigan State University Press, 2003), Pp. 223-285. (PDF, 1.13MB)
Meyer contends that intelligent design provides a better explanation than competing chemical evolutionary models for the origin of the information present in large bio-macromolecules such as DNA, RNA, and proteins. Meyer shows that the term information as applied to DNA connotes not only improbability or complexity but also specificity of function. He then argues that neither chance nor necessity, nor the combination of the two, can explain the origin of information starting from purely physical-chemical antecedents. Instead, he argues that our knowledge of the causal powers of both natural entities and intelligent agency suggests intelligent design as the best explanation for the origin of the information necessary to build a cell in the first place.
Behe, M. J., Design in the details: The origin of biomolecular machines, in Darwinism, Design, & Public Education (Michigan State University Press, 2003), Pp. 287-302Behe sets forth a central concept of the contemporary design argument, the notion of “irreducible complexity.” Behe argues that the phenomena of his field include systems and mechanisms that display complex, interdependent, and coordinated functions. Such intricacy, Behe argues, defies the causal power of natural selection acting on random variation, the “no end in view” mechanism of neo-Darwinism. Yet he notes that irreducible complexity is a feature of systems that are known to be designed by intelligent agents. He thus concludes that intelligent design provides a better explanation for the presence of irreducible complexity in the molecular machines of the cell.
Dembski, W.A., Reinstating design within science, in Darwinism, Design, & Public Education (Michigan State University Press, 2003), Pp. 403-418.Dembski argues that advances in the information sciences have provided a theoretical basis for detecting the prior action of an intelligent agent. Starting from the commonsense observation that we make design inferences all the time, Dembski shows that we do so on the basis of clear criteria. He then shows how those criteria, complexity and specification, reliably indicate intelligent causation. He gives a rational reconstruction of a method by which rational agents decide between competing types of explanation, those based on chance, physical-chemical necessity, or intelligent design. Since he asserts we can detect design by reference to objective criteria, Dembski also argues for the scientific legitimacy of inferences to intelligent design.
Stephen Meyer, “The Origin of Biological Information and the Higher Taxonomic Categories” Proceedings of the Biological Society of Washington 117 (2004): 213-239.Meyer argues that competing materialistic models (Neo-Darwinism, Self -Organization Models, Punctuated Equilibrium and Structuralism) are not sufficient to account for origin of the information necessary to build novel animal forms present in the Cambrian Explosion. He proposes intelligent design as an alternative explanation for the origin of biological information and the higher taxa.
Lnnig, W.-E. Dynamic genomes, morphological stasis and the origin of irreducible complexity, Dynamical Genetics, Pp. 101-119. (PDF, 2.95MB; HTML)Biology exhibits numerous invariants -- aspects of the biological world that do not change over time. These include basic genetic processes that have persisted unchanged for more than three-and-a-half billion years and molecular mechanisms of animal ontogenesis that have been constant for more than one billion years. Such invariants, however, are difficult to square with dynamic genomes in light of conventional evolutionary theory. Indeed, Ernst Mayr regarded this as one of the great unsolved problems of biology. In this paper Dr.Wolf-Ekkehard Lnnig Senior Scientist in the Department of Molecular Plant Genetics at the Max-Planck-Institute for Plant Breeding Research employs the design-theoretic concepts of irreducible complexity (as developed by Michael Behe) and specified complexity (as developed by William Dembski) to elucidate these invariants, accounting for them in terms of an intelligent design (ID) hypothesis. Lnnig also describes a series of scientific questions that the theory of intelligent design could help elucidate, thus showing the fruitfulness of intelligent design as a guide to further scientific research.
Jonathan Wells, “Do Centrioles Generate a Polar Ejection Force?," Rivista di Biologia/Biology Forum 98 (2005): 37-62.Most animal cells contain a pair of centrioles, tiny turbine-like organelles oriented at right angles to each other that replicate at every cell division. Yet the function and behavior of centrioles remain mysterious. Since all centrioles appear to be equally complex, there are no plausible evolutionary intermediates with which to construct phylogenies; and since centrioles contain no DNA, they have attracted relatively little attention from neo Darwinian biologists who think that DNA is the secret of life. From an intelligent design (ID) perspective, centrioles may have no evolutionary intermediates because they are irreducibly complex. And they may need no DNA because they carry another form of biological information that is independent of the genetic mutations relied upon by neo-Darwinists. In this paper, Wells assumes that centrioles are designed to function as the tiny turbines they appear to be, rather than being accidental by-products of Darwinian evolution. He then formulates a testable hypothesis about centriole function and behavior that”if corroborated by experiment could have important implications for our understanding of cell division and cancer. Wells thus makes a case for ID by showing its strong heuristic value in biology. That is, he uses the theory of intelligent design to make new discoveries in biology.
Scott Minnich and Stephen C. Meyer, “Genetic Analysis of Coordinate Flagellar and Type III Regulatory Circuits,” Proceedings of the Second International Conference on Design & Nature, Rhodes Greece, edited by M.W. Collins and C.A. Brebbia (WIT Press, 2004). (PDF, 620KB)This article underwent conference peer review in order to be included in this peer-edited proceedings. Minnich and Meyer do three important things in this paper. First, they refute a popular objection to Michael Behe’s argument for the irreducible complexity of the bacterial flagellum. Second, they suggest that the Type III Secretory System present in some bacteria, rather than being an evolutionary intermediate to the bacterial flagellum, is probably represents a degenerate form of the bacterial flagellum. Finally, they argue explicitly that intelligent design is a better than the Neo-Darwinian mechanism for explaining the origin of the bacterial flagellum.

. A. Voie, "Biological function and the genetic code are interdependent," Chaos, Solitons and Fractals, Vol 28(4) (2006): 1000-1004.In this article, Norwegian scientist yvind Albert Voie examines an implication of Gdel’s incompleteness theorem for theories about the origin of life. Gdel’s first incompleteness theorem states that certain true statements within a formal system are unprovable from the axioms of the formal system. Voie then argues that the information processing system in the cell constitutes a kind of formal system because it “expresses both function and sign systems.” As such, by Gdel’s theorem it possesses many properties that are not deducible from the axioms which underlie the formal system, in this case, the laws of nature. He cites Michael Polanyi’s seminal essay, Life’s Irreducible Structure, in support of this claim. As Polanyi put it, “the structure of life is a set of boundary conditions that harness the laws of physics and chemistry their (the boundary condition's) structure cannot be defined in terms of the laws that they harness.” As he further explained, “As the arrangement of a printed page is extraneous to the chemistry of the printed page, so is the base sequence in a DNA molecule extraneous to the chemical forces at work in the DNA molecule.” Like Polanyi, Voie argues that the information and function of DNA and the cellular replication machinery must originate from a source that transcends physics and chemistry. In particular, since as Voie argues, “chance and necessity cannot explain sign systems, meaning, purpose, and goals,” and since “mind possesses other properties that do not have these limitations,” it is “therefore very natural that many scientists believe that life is rather a subsystem of some Mind greater than humans.”

M.J. Behe and D.W. Snoke, “Simulating Evolution by Gene Duplication of Protein Features That Require Multiple Amino Acid Residues,” Protein Science, 13 (2004): 2651-2664.D. A. Axe, “Estimating the Prevalence of Protein Sequences Adopting Functional Enzyme Folds,” Journal of Molecular Biology, Vol. 341 (2004): 1295-1315.W.-E. Lnnig & H. Saedler, “Chromosome Rearrangements and Transposable Elements,” Annual Review of Genetics, 36 (2002): 389-410.D.K.Y. Chiu & T.H. Lui, “Integrated Use of Multiple Interdependent Patterns for Biomolecular Sequence Analysis,” International Journal of Fuzzy Systems, 4(3) (September 2002): 766-775.M.J. Denton, J.C. Marshall & M. Legge, (2002) “The Protein Folds as Platonic Forms: New Support for the pre-Darwinian Conception of Evolution by Natural Law,” Journal of Theoretical Biology 219 (2002): 325-342.D. A. Axe, “Extreme Functional Sensitivity to Conservative Amino Acid Changes on Enzyme Exteriors,” Journal of Molecular Biology, Vol. 301 (2000): 585-595.Lnnig, W.-E. Dynamic genomes, morphological stasis and the origin of irreducible complexity, Dynamical Genetics, Pp. 101-119. In Dynamical Genetics by V. Parisi, V. de Fonzo & F. Aluffi-Pentini, eds.,(Research Signpost, 2004)Granville Sewell, Postscript, in Analysis of a Finite Element Method: PDE/PROTRAN (Springer Verlag, 1985). (HTML)

D. A. Axe, “Estimating the Prevalence of Protein Sequences Adopting Functional Enzyme Folds,” Journal of Molecular Biology, Vol. 341 (2004): 1295-1315.This experimental study found that functional protein folds are extremely rare, finding that, “roughly one in 1064 signature-consistent sequences forms a working domain” and that the “overall prevalence of sequences performing a specific function by any domain-sized fold may be as low as 1 in 1077.” Axe concludes that “functional folds require highly extraordinary sequences.” Since Darwinian evolution only preserves biological structures which confer a functional advantage, this indicates it would be very difficult for such a blind mechanism to produce functional protein folds. This research also shows that there are high levels of specified complexity in enzymes, a hallmark indicator of intelligent design. Axe himself has confirmed that this study adds to the evidence for intelligent design: "In the 2004 paper I reported experimental data used to put a number on the rarity of sequences expected to form working enzymes. The reported figure is less than one in a trillion trillion trillion trillion trillion trillion. Again, yes, this finding does seem to call into question the adequacy of chance, and that certainly adds to the case for intelligent design." See Scientist Says His Peer-Reviewed Research in the Journal of Molecular Biology "Adds to the Case for Intelligent Design".

It may be the author's opinion that his research supports ID, but how are scientists going to know this if he only points it out at ID websites instead of in the paper itself?