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Author Topic:   The Origin of Novelty
kofh2u
Member (Idle past 3849 days)
Posts: 1162
From: phila., PA
Joined: 04-05-2004


Message 151 of 871 (690879)
02-17-2013 8:31 AM
Reply to: Message 132 by Bolder-dash
02-12-2013 8:44 PM


Re: Experimentation, no straw needed
No Blue Jay, the real question I am asking is not whether or not mutations could form an eye, the question is whether or not RANDOM mutations could form an eye-and I think the answer to that is almost certainly no.
Then do you suspect a Direct Evolution might be possible which could be supported by the presence of Instincts in high animals?
Instincts are learned responses that organism acquired while alive, which became integrated into their genetic make up, and reconstituted in their unconscious in future births of the species.
Example:
There's a marvellous little bird called the Pacific Golden Plover (Pluvialis fulva).
It does this fantastic thing, which evolution cannot even BEGIN to account for, and provides further proof if it were needed, that the theory should be abandoned.
The story begins in Alaska, where the birds breed. They lay their eggs, which hatch out normally, and the parents stay with them till they are reasonably able to take care of themselves.
Then the impossible happens.
The parents fly away, leaving them behind. But that's not the amazing part.
The parents now embark upon a 2,800 MILE JOURNEY to Hawaii, ACROSS THE TRACKLESS PACIFIC OCEAN, a journey taking about 88 hours of NON-STOP flying time.
In the process, they lose about half their body weight.
Now consider HOW these birds could possibly navigate their way from Alaska to Hawaii. Could you?
Without instruments and maps?
There's nothing to guide them - not the stars, because they fly by day and by night.
If they're one degree off course, they'll end belly up in the Pacific Ocean. But even if headwinds/ sidewinds blow them off course, they still make it.
They summer there, and then, head back to Alaska, across another 2,800 mile journey, where they breed again.
Edited by kofh2u, : No reason given.

This message is a reply to:
 Message 132 by Bolder-dash, posted 02-12-2013 8:44 PM Bolder-dash has replied

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Bolder-dash
Member (Idle past 3660 days)
Posts: 983
From: China
Joined: 11-14-2009


Message 152 of 871 (690885)
02-17-2013 9:32 AM
Reply to: Message 151 by kofh2u
02-17-2013 8:31 AM


Re: Experimentation, no straw needed
I would agree that there are thousands of examples of behavior, that are unaccountable under Darwinian evolution. I would certainly classify instinctively known behaviors as things that just don't make sense in a random mutation for everything model.
Where in the genome is all of these experiences, that get passed on automatically, in the form of preset memories for offspring? I don't think Darwinists have any explanation for this. So yes, indeed I do believe in some form of learned experience translating into genetic information.
And since Darwinists get away with it, those with alternative beliefs should just be able to call it, the 'modern synthesis of Lamarckism', so in that way its as vague and elastic as possible.

This message is a reply to:
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bluegenes
Member (Idle past 2507 days)
Posts: 3119
From: U.K.
Joined: 01-24-2007


(1)
Message 153 of 871 (690887)
02-17-2013 11:46 AM
Reply to: Message 148 by Bolder-dash
02-17-2013 6:45 AM


Re: Natural selection
Bolder-dash writes:
You make far too many assumptions, which don't deserve to be assumed, for me to say that I agree with your statements.
First, you assume that random, mistaken replications, given enough chances, would produce something which has functionality. There is not any observations, to assume this to be the case.
There are plenty of observations that show that to be the case. About how many research papers on the subject did you read before you came to your "not any observations" conclusion?
Bolder-dash writes:
So why would you say that I know that mutations can cause advantageous novelty?
I thought you might have bothered to find out about the subject before commenting on it on the internet.
Bolder-dash writes:
If anything, I only know that mutations can cause disadvantageous novelty.
Perhaps you should look a little further into the subject. Or a lot further. Mutations certainly regularly cause disadvantageous novelty, which is what one might expect from randomness, isn't it? Are you claiming that mutations never produce advantageous novelty of any kind?
Bolder-dash writes:
In virtually every instance where you claim that mutations are causing advantages, we can see that the price for those advantages is also to the detriment of the organism. Like say you could be born with no feet.
Do you think I'd be likely to present that as an example? Unless you're in a population group that has ceased to use its feet (whale or snake ancestors, for example) that would almost invariably have a net disadvantage.
Bolder-dash writes:
Well, that is an advantage in that you probably wont contract athletes foot. And you probably won't step on any glass, or come down with ingrown toenails, and you won't get your feet caught in a car door. All of these can be said to be advantageous, if you want to use your thinking.
That was your thinking, not mine, I'm glad to say.
Bolder-dash writes:
But it doesn't tell me you can build a system of extremely complex and inter-dependent parts.
Well certainly, mutating feet away wouldn't tell you that a system of extremely complex and inter-dependent parts could be built. Is a research paper on mutating feet away the only one you've read concerning the novel effects of mutations? Perhaps you should continue your perusal of the research literature and see if there are any examples that help tell you how complex systems might be built. You would need to be very familiar with this literature in order to be able to reasonably establish your "no observations" claim that I quoted at the beginning of the post, wouldn't you?
Try looking for examples of advantageous mutation in general, and then for examples in which mutations build on other mutations to create an advantage (because that would have to happen in the build up of complex organs over time). You'll find that there's plenty of evidence for both. Many creationists know this, so I'm genuinely surprised that you don't.

This message is a reply to:
 Message 148 by Bolder-dash, posted 02-17-2013 6:45 AM Bolder-dash has replied

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Bolder-dash
Member (Idle past 3660 days)
Posts: 983
From: China
Joined: 11-14-2009


Message 154 of 871 (690888)
02-17-2013 12:02 PM
Reply to: Message 153 by bluegenes
02-17-2013 11:46 AM


Re: Natural selection
Bluegenes,
Is there some reason you wish to be so mysterious? If there is all this evidence of mutations building upon themselves to form useful functions, rather than deleterious deformities, why don't your start mentioning a few of your favorite examples. This is a website for information you know. Now is your chance to show just how robust this theory really is.

This message is a reply to:
 Message 153 by bluegenes, posted 02-17-2013 11:46 AM bluegenes has replied

Replies to this message:
 Message 155 by bluegenes, posted 02-17-2013 12:50 PM Bolder-dash has replied
 Message 188 by Taq, posted 02-19-2013 3:33 PM Bolder-dash has replied

  
bluegenes
Member (Idle past 2507 days)
Posts: 3119
From: U.K.
Joined: 01-24-2007


(1)
Message 155 of 871 (690890)
02-17-2013 12:50 PM
Reply to: Message 154 by Bolder-dash
02-17-2013 12:02 PM


Re: Natural selection
Bolder-dash writes:
Bluegenes,
Is there some reason you wish to be so mysterious?
In the post I was replying to, you claimed that there were no observations to support the view that mutations could produce novel function. The mystery is how you could think this is true. I asked you if you were claiming that there are never any advantageous mutations. You've avoided the question.
Bolder-dash writes:
If there is all this evidence of mutations building upon themselves to form useful functions, rather than deleterious deformities, why don't your start mentioning a few of your favorite examples.
But you're discussing biology on the internet, and criticizing its central theory. In order to even begin to do that, you should already be familiar with examples of mutations producing advantageous novel functions. Are you essentially admitting to knowing so little about the subject that your criticisms are meaningless?
Bolder-dash writes:
This is a website for information you know. Now is your chance to show just how robust this theory really is.
You're showing how robust it is as a best explanation. You do that every time you demonstrate a strong desire to criticise it, but fail to come up with any evidence based alternative. That means other explanations based on demonstrably real processes. Mutation, selection and drift are real.
Speaking of information, you didn't actually base your claim that there were no observations to support the view that mutations could produce novel advantageous function on information at all, did you? Be honest, and admit that it was just desire based nonsense, which is why, of course, you've avoided telling me how many research papers you've read on the subject.
So why are you expressing strong views on biology, while at the same time asking me for information that anyone expressing strong views on biology should already have?

This message is a reply to:
 Message 154 by Bolder-dash, posted 02-17-2013 12:02 PM Bolder-dash has replied

Replies to this message:
 Message 156 by Bolder-dash, posted 02-17-2013 1:08 PM bluegenes has replied

  
Bolder-dash
Member (Idle past 3660 days)
Posts: 983
From: China
Joined: 11-14-2009


Message 156 of 871 (690892)
02-17-2013 1:08 PM
Reply to: Message 155 by bluegenes
02-17-2013 12:50 PM


Re: Natural selection
bluegenes
This is one of the lamest, biggest cope-out posts I have ever read here. And I am including the things that Panda writes.
Imagine if someone came on here an said there is tons of evidence to show that Intelligent design has been shown in research. And if you questioned that statement, all I had in reply was-"Well, why don't you go online and read all about it. Haven't you ever studied it. What evidence do you have that this is not true."
That is the gist of your ramblings. You have nothing-and instead of trying to show otherwise, all you can say is, well, its there, its not my fault you don't know about it. Its weak, its desperate, and its dishonest. Why did you even come on here, when you have absolutely nothing to contribute?

This message is a reply to:
 Message 155 by bluegenes, posted 02-17-2013 12:50 PM bluegenes has replied

Replies to this message:
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bluegenes
Member (Idle past 2507 days)
Posts: 3119
From: U.K.
Joined: 01-24-2007


Message 157 of 871 (690895)
02-17-2013 2:02 PM
Reply to: Message 156 by Bolder-dash
02-17-2013 1:08 PM


Re: Natural selection
Bolder-dash writes:
bluegenes
This is one of the lamest, biggest cope-out posts I have ever read here. And I am including the things that Panda writes.
Imagine if someone came on here an said there is tons of evidence to show that Intelligent design has been shown in research. And if you questioned that statement, all I had in reply was-"Well, why don't you go online and read all about it. Haven't you ever studied it. What evidence do you have that this is not true."
Yes, I'm imagining hard. And if you've got any research papers which demonstrate examples of supernatural beings designing novel advantageous features in organisms, then why not make the suggestion? I'd willingly read them.
Bolder-dash writes:
That is the gist of your ramblings. You have nothing-and instead of trying to show otherwise, all you can say is, well, its there, its not my fault you don't know about it.
I said more than that. I implied that it's entirely your fault. It's you who chooses to have strong opinions about biology while admitting to not knowing of one single example of mutations producing advantageous novel features. You've been on the board three years, and plenty of examples will have been posted. Is the problem that when you read them you don't understand them?
Bolder-dash writes:
Its weak, its desperate, and its dishonest. Why did you even come on here, when you have absolutely nothing to contribute?
Go through your 878 posts and find one which presents positive evidence for any theory of the origin of species other than evolutionary theory. Then assess your contribution. You can easily find examples of mutations producing novelty in my back posts.
Here's the first question that I put to you on the thread, and which you avoided:
bluegenes writes:
I like your use of the words "plausible" and "realistic". Don't you agree that any hypothetical scenario involving demonstrably real processes, like mutation and selection, easily meets the plausibility standards of those who believe that the source of animal features is magic?
Don't you agree? If not, tell us what the words "plausible" and "realistic" mean to you.

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RAZD
Member (Idle past 1435 days)
Posts: 20714
From: the other end of the sidewalk
Joined: 03-14-2004


Message 158 of 871 (690896)
02-17-2013 2:18 PM
Reply to: Message 146 by Bolder-dash
02-16-2013 10:19 PM


evolutionary two-step
I think you and Taq must be on the same wavelength. Its uncanny.
Perhaps there is a reason for that, having to do with understanding how evolution works;
(1) The process of evolution involves changes in the composition of hereditary traits, and changes to the frequency of their distributions within breeding populations from generation to generation, in response to ecological challenges and opportunities.
..., how does an entire system like how genes, which can form complete fully formed eyeballs, come about through random, accidental (remember accident means no intent in this universe) deformities? ... (mutations)
By building up gradually from primitive systems to highly derived systems via the evolutionary two-step feedback response system that is repeated in each generation:
Like walking on first one foot and then the next. Random variation and then fitness selection, step by step slowly he turns ...
I suppose if you think the creation of an eye is as simple as detecting light, detecting the direction of light, and than detecting an image than anything is simple. I feel you think your eyes are so simple, that there is no point in you even trying to use them to see the obvious problem with trying to do things in a willy nilly accidental step way.
But it is simple steps, simple to achieve genetically and simple to achieve in the phenotype that then subjects it to selection.
It seems you keep forgetting\omitting\denying the selection process that makes each subsequent step dependent on the fitness of the previous step, building on previous evolutionary steps.
We now see that life's body plans are controlled by epigenetic pathways that are so complex that you can take them apart piece by piece and have them make any sense at all. How can epigenetics form through random mutations and natural selection? ...
Step by step. Random variation and then selection for fitness, over time builds up these derived systems from primitive ones.
If you are dealt a 5-card hand and continually discard anything not a heart, to be replaced by new cards, are you likely to end up with an all heart hand or one that is a complete jumble?
Enjoy.

we are limited in our ability to understand
by our ability to understand
Rebel American Zen Deist
... to learn ... to think ... to live ... to laugh ...
to share.


Join the effort to solve medical problems, AIDS/HIV, Cancer and more with Team EvC! (click)

This message is a reply to:
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Blue Jay
Member (Idle past 2727 days)
Posts: 2843
From: You couldn't pronounce it with your mouthparts
Joined: 02-04-2008


Message 159 of 871 (690899)
02-17-2013 3:23 PM
Reply to: Message 151 by kofh2u
02-17-2013 8:31 AM


Re: Experimentation, no straw needed
Hi, Kofh2u
kofh2u writes:
Instincts are learned responses that organism acquired while alive, which became integrated into their genetic make up, and reconstituted in their unconscious in future births of the species.
This is not correct: instincts are not learned, they are innate.
kofh2u writes:
The parents now embark upon a 2,800 MILE JOURNEY to Hawaii, ACROSS THE TRACKLESS PACIFIC OCEAN, a journey taking about 88 hours of NON-STOP flying time.
In the process, they lose about half their body weight.
Now consider HOW these birds could possibly navigate their way from Alaska to Hawaii. Could you?
...If they're one degree off course, they'll end belly up in the Pacific Ocean. But even if headwinds/ sidewinds blow them off course, they still make it.
They summer there, and then, head back to Alaska, across another 2,800 mile journey, where they breed again.
I didn't know anything about this particular species of bird, so I looked it up on Cornell's All About Birds website (link). Here are some things Cornell says about the migratory and overwintering behavior of the Pacific Golden-Plover:
quote:
...winters on islands across the Pacific Ocean, through southeast Asia, to northeastern Africa...
...The winter range of the Pacific Golden-Plover extends across nearly half of the earth's circumference, from California, to Hawaii, to Asia, to northeastern Africa.
So, there really isn't anything "fine-tuned" about this behavior, at all: some of them go to Hawaii, some of them go to Fiji, some of them go to Indonesia, and some of them go to Africa. And, undoubtedly, some of them go "belly up in the Pacific."
This is not really difficult to reconcile with the Theory of Evolution.

-Blue Jay (a.k.a. Mantis, Thylacosmilus)
Darwin loves you.

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PaulK
Member
Posts: 17828
Joined: 01-10-2003
Member Rating: 2.5


Message 160 of 871 (690901)
02-17-2013 3:41 PM
Reply to: Message 159 by Blue Jay
02-17-2013 3:23 PM


Re: Pacific Golden Plover
...And some end up way off course...
Pacific Golden Plover at Cley, Norfolk

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Blue Jay
Member (Idle past 2727 days)
Posts: 2843
From: You couldn't pronounce it with your mouthparts
Joined: 02-04-2008


(1)
Message 161 of 871 (690902)
02-17-2013 4:28 PM
Reply to: Message 146 by Bolder-dash
02-16-2013 10:19 PM


Hox genes
Hi, Dash.
Bolder-dash writes:
A complete eye can suddenly pop up on a fish, fully formed, by the process of hox genes switches.
Hox genes are actually really simple to understand.
Basically, hox genes are kind of like a labeling system. A developing embryo can produce all kinds of molecular machinery to develop a given cluster of cells into an arm, an ear, or a gonad. The hox genes basically tell each cell which machinery it will deploy, and when it will deploy it.
So, if this fish's three-eyed phenotype actually was caused by a mutation to a hox gene, what it means is that, when the fish was an embryo, the mutant allele labeled three areas of the body as "eyes," and then the machinery was deployed in all three areas, instead of just in two areas, like it normally would have.
So, a hox gene mutant could theoretically cause the molecular machinery to "build" an extra, more-or-less complete eye on a human's shin. But, a complete eye that functions like a normal human eye would require the tissues around the eye to develop into muscles, an eye socket, an eyelid and an optic nerve, all of which may be driven by entirely unrelated hox genes.
Single hox mutations don't typically produce fully functional, extra organs. So, I bet this fish's third eye was non-functional (like a certain band from the late 90's).
Edited by Blue Jay, : superfluous "a"

-Blue Jay (a.k.a. Mantis, Thylacosmilus)
Darwin loves you.

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mindspawn
Member (Idle past 2690 days)
Posts: 1015
Joined: 10-22-2012


Message 162 of 871 (690916)
02-18-2013 1:12 AM
Reply to: Message 141 by herebedragons
02-16-2013 12:57 PM


I for one would have a much easier time accepting this type of hypothesis (not willing to call it a theory at this point) if it wasn't constrained to 6,000 years. A creation scenario would be much more plausible if the time frame was say more like (at least) 10,000,000 to 100,000,000 years since the creation event. But since most creationists want to cram all of earth's history into 6,000 years, it becomes a virtual impossibility to reconcile with the available evidence. Do you consider an old earth as a possibility?
I do believe in an old earth (Genesis: God created the heavens and earth and the earth was formless and empty - and then there was light, the first day)
But I believe biological life is restricted to the last 6500 years. I will be going into this in more detail in the Dates and Dating forum after I have finished discussing DNA in various threads. As you said we have a current "snapshot" of the genome, through genome sequencing. I am wondering why evolutionists would look at a particular genome and believe it reflects evolution rather than creation 6500 years ago (with some evolutionary changes since then.) ie we see mutations, but do these look like 200 million years quantity of accumulated mutations, or 6500 years quantity of mutations. Maybe that isn't the best measurement, but my point is that evolutionists need some backing for their assumption that the genome "looks" evolved rather than created.
Tiny, tiny pieces of what has happened. We don't expect to see significant changes (on the order of what creationists usually demand) in the comparatively small time period we have been studying evolution. Maybe 150 years seems like a long time, but in the grand scheme of things, its nothing - insignificant.
I do understand this point, and do sympathise with evolutionists that current timeframes are not long enough to see any proof of your hypothesis. Until then we observe devolution and variation through sexual reproduction, which fits in with both creationism and evolution. That is why I am wondering why you would favor evolution when the snapshot fits in with both "hypotheses".
Another thing I have noticed in some of your discussions is that you put too much emphasis on "coding genes." Coding genes get all the glory and recognition but they are only a piece of the whole picture. Theoretically, you could have two organisms with the exact same coding genes, but they express significantly different phenotypes. The major player in phenotype changes is in developmental processes. Developmental processes can use existing genetic materials and reorganize them into completely new structures depending on when and how they are expressed. I would encourage you to do some research into this area of study .. it is fascinating - and enlightening.
Yes but that is more "creationist" thinking, the God-given ability of life to rapidly adapt when under strong selection pressures. Over and above this intrinsic ability, evolutionists are claiming life can get more complex, increased numbers of coding genes over time. Without that we would be green slime with limited genetic functionality. If I agree with all other evolutionary processes and assume they would be observed in 6500 years of biological creation, what in current genome sequencing would contradict my view?
And if there is nothing in current genome sequencing or other biological studies that contradicts the view of 6500 years of evolution since creation, then what further biological evidence would lead evolutionists to favor the evolution hypothesis over creationism?
Edited by mindspawn, : No reason given.

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mindspawn
Member (Idle past 2690 days)
Posts: 1015
Joined: 10-22-2012


Message 163 of 871 (690917)
02-18-2013 2:05 AM
Reply to: Message 142 by bluegenes
02-16-2013 1:22 PM


For a start, the mechanisms and processes of evolutionary theory are demonstrably real (mutation, selection, drift etc.). That's not true of any supernatural creation "theory".
I'm not sure if all are aware of my particular theory on creationism. I agree with all evolutionary processes except the evolution of additional protein-coding genes. I believe ~6500 years ago God make highly adaptable organisms in a relatively safe environment. Designed to adapt to their environment through variations in protein production (promoters and enhancers communicating with the outside world) and sexual reproduction (new genetic combinations). This world then became unsafe, disease and mutations and rapidly changing environments and extinctions. Fortunately some mutations have allowed organisms to survive some of the new damaging environments (example: disabled Duffy gene in malaria areas).
This is what I observe in genome sequencing and wonder why evolution is a stronger theory than creationism.
If you look at a genome, and see two genes which look exactly as a pair duplicate genes should look, and you know that gene duplication is a demonstrably real phenomenon, then the best explanation for these genes is that they are paralogs. Suggestions like "the fairies might have put them there" can't really compete unless we can establish the existence of gene making fairies, can they?
Well if you put aside the source of biological life, (the supernatural process of abiogenesis compared to the supernatural God) and then look at the actual evidence with unbiased glasses on, does the evidence favor evolution involving increasing coding complexity? ie could the one species have a deleted gene (a common beneficial mutation), rather than the other having a duplicated protein-coding gene? Or maybe the duplicated gene is subsequent and yet non-coding, which is observed to add hardiness to an organism. We have to have an open-minded in depth look at each study to draw the most likely conclusions from the evidence itself.
Perhaps you are lucky not to be debating me in your great debate, because I'd be asking you for a demonstrably real way in which apparent paralogs could arrive in genomes other than duplication.
Shall we have a thread in which you can present evidence to support your hypothesis that duplications of protein coding genes are always disadvantageous, and I'll present evidence for the opposite. Or, if that is no longer your claim, you could support the view that additional neofunctional protein coding genes can't come into existence, and I'll present evidence that they can.
Would you like to start one, so you can state your view clearly in the O.P.? I see no reason for it not to be public, but if you'd like it to be one on one to avoid getting piled onto, that's fine by me.
I think you'll agree from looking at the peanut gallery that I'll be good at understanding the points you're trying to make.
Good idea, I did appreciate your comprehension of my view, but let's rather carry on here for now, I like to deal with one thread at a time. Due to the fact that a lot of novelty is supposed to originate in mutated protein-coding genes, I believe the topic is relevant to this thread.

This message is a reply to:
 Message 142 by bluegenes, posted 02-16-2013 1:22 PM bluegenes has replied

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mindspawn
Member (Idle past 2690 days)
Posts: 1015
Joined: 10-22-2012


(1)
Message 164 of 871 (690918)
02-18-2013 2:46 AM
Reply to: Message 143 by Blue Jay
02-16-2013 1:39 PM


I don't think we've ever debated before, but maybe I just forgot. Either way, welcome to the thread!
Thank you!
If you don't mind, when I discuss your hypothesis, I'm going to take terminology from panspermia and baraminology, because it seems to fit the bill.
Your hypothesis is basically that life on Earth came from somewhere else (panspermia), and that the evolutionary Tree of Life is actually a "Forest of Life," rather than a single tree (baraminology).
The only way that this really differs from the mainstream views of modern evolutionary biology, is that it rejects the notion of common descent (which is not a necessary tenet of the ToE, but one that is currently mostly agreed upon).
So, your hypothesis would predict nested hierarchical patterns in the diversity of life, just as mainstream evolutionary biology does. But, it would also predict that the pattern of nested hierarchies would break down at some point, such that we would be unable to link all the separate lineages of organisms into a single Tree.
I will reserve my complete assent, but this all makes a lot of sense.
The two hypotheses generally agree on the nested hierarchical patterns. Where we differ, however, is in whether there are "breaks" in that pattern. Evolutionary biology does not posit such breaks, so it does not have to provide evidence, one way or the other: it is incumbent upon baraminologists to produce additional evidence to support the additional mechanic of their hypothesis (the principle of parsimony).
So, how can we identify where the pattern of nested hierarchies potentially breaks down? To me, it looks like the pattern doesn't break down: every level in the hierarchy seems to be nested inside a larger level, and the pattern of diversity at each level seems to differ only in magnitude, not in kind. But, I could simply be overlooking something, so let's see if we can "baraminize" our current Tree of Life
I believe that the general problem lies with evolutionists interpretation of the geological column as showing some long-term nested hierarchies, which isn't really applicable to this thread. What is applicable to this thread is the "snapshot" of genome sequencing, and whether that can in any manner support evolutionary theory. We observe categories, families, species. Is there anything in biology that would point to these having being evolved or rather created like that? Categories and groupings are a natural outworking of intelligent design (eg car manufacturers) , and if we both state that genomes "look" designed or "look" evolved" from common ancestors, well if that's all we can say then the theories are on equal footing.
You sort of imply that biological novelties might hold the key. You claim that we never see new protein-coding genes emerge: we only see deletions, reductions, losses of function, etc.
Well, if this is correct, I would predict that we could clearly divide up all life-forms into a distinct set of baramins, in which the basal forms of each baramin have the maximal number of protein-coding genes within the baramin, and all derived forms would have either the same number, or fewer, and none would have any novel genes or structures. And, I would also expect that we couldn't organize these baramins into a pattern that resembles the nested hierarchical pattern we would observe within a baramin (i.e., no two baramins should appear more closely related to one another than any other two).
You conclusions about baramins all have the same degree of variance from eachother, I find illogical from the perspective of understanding intelligent design. Refer again to car manufacturers, they will make cars according to categories. Each category (4x4) will have their own range, and yet large overlaps of design within their 4x4 range. Some categories (sedans) will be split into two sub-categories (eg luxury/low income) and have a largely overlapping engine and chassis and drive functions compared to say a 4x4. So we get a Toyota Avanza and Corolla with basic core design similarities, yet a Toyota Foretuner and Toyota Landcruiser also have design similarities, yet the two groups are very different from eachother. So the number of groupings, and the likeness between groupings are not as spread as you are claiming. Two separate baramins could be highly similar without being the same baramin, then two other separate species could be recently evolved from the same baramin, the secret is to analyze the similarity of the genotype, not the phenotype.
I agree with what you are saying about the maximum number of protein coding genes in each baramin,and that all nature could be quite easily divided into separate baramins. I currently lack the scientific ability to do this, relying on a non-scientific more intuitive process based on what seems obvious to me, hey that monkey differs from the other monkey by only 50 point mutations and one deleted gene, same baramin. That monkey differs by fifteen genes in chromosome 2, and 8 genes in chromosome 4, different baramin. The idea is that nature does not produce complex functions, and to duplicate protein-coding genes causes massive duplications of protein production that normally causes damage.
Edited by mindspawn, : No reason given.
Edited by mindspawn, : No reason given.
Edited by mindspawn, : No reason given.

This message is a reply to:
 Message 143 by Blue Jay, posted 02-16-2013 1:39 PM Blue Jay has replied

Replies to this message:
 Message 172 by Blue Jay, posted 02-18-2013 12:04 PM mindspawn has replied
 Message 189 by Taq, posted 02-19-2013 4:37 PM mindspawn has not replied

  
bluegenes
Member (Idle past 2507 days)
Posts: 3119
From: U.K.
Joined: 01-24-2007


(1)
Message 165 of 871 (690932)
02-18-2013 5:49 AM
Reply to: Message 163 by mindspawn
02-18-2013 2:05 AM


mindspawn writes:
bluegenes writes:
For a start, the mechanisms and processes of evolutionary theory are demonstrably real (mutation, selection, drift etc.). That's not true of any supernatural creation "theory".
I'm not sure if all are aware of my particular theory on creationism. I agree with all evolutionary processes except the evolution of additional protein-coding genes. I believe ~6500 years ago God make highly adaptable organisms in a relatively safe environment. Designed to adapt to their environment through variations in protein production (promoters and enhancers communicating with the outside world) and sexual reproduction (new genetic combinations). This world then became unsafe, disease and mutations and rapidly changing environments and extinctions. Fortunately some mutations have allowed organisms to survive some of the new damaging environments (example: disabled Duffy gene in malaria areas).
Or duplications of CCL3L1 in HIV areas (everywhere).
mindspawn writes:
This is what I observe in genome sequencing and wonder why evolution is a stronger theory than creationism.
Well, apart from the point I made above, and apart from the fact that it's blown out by the combined evidence of dating methods that crosscheck from archaeology alone, it doesn't actually fit what we see in genomes. Does your model have humans being created in separate groups on different continents 6,500 years ago? I ask because I'm wondering if you'd expect stone age skeletons (determined by their artifacts rather than dating that you don't want to believe in) on different continents to bear a greater genetic resemblance to each other than they do to modern humans indigenous to the same regions. What would your model predict?
mindspawn writes:
Well if you put aside the source of biological life, (the supernatural process of abiogenesis compared to the supernatural God)......
???? There's nothing in physics or chemistry to suggest that chemical self-replicators can't form naturally. We don't currently have a strong theory of how the rings of Saturn formed, and of many other things, but it is irrational to infer supernatural causes on the basis of our ignorance of detail.
There's infinitely more evidence for natural chemical processes forming chemical phenomena in general than there is for supernatural involvement in the earth's chemistry.
.....and then look at the actual evidence with unbiased glasses on, does the evidence favor evolution involving increasing coding complexity?
Yes. Overwhelmingly.
mindspawn writes:
ie could the one species have a deleted gene (a common beneficial mutation), rather than the other having a duplicated protein-coding gene? Or maybe the duplicated gene is subsequent and yet non-coding, which is observed to add hardiness to an organism. We have to have an open-minded in depth look at each study to draw the most likely conclusions from the evidence itself.
I'm not quite sure what you're getting at in the first two sentences, but I agree on the last.
Edited by bluegenes, : inserted missing quote

This message is a reply to:
 Message 163 by mindspawn, posted 02-18-2013 2:05 AM mindspawn has replied

Replies to this message:
 Message 166 by mindspawn, posted 02-18-2013 6:36 AM bluegenes has replied

  
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