|
Register | Sign In |
|
QuickSearch
EvC Forum active members: 64 (9164 total) |
| |
ChatGPT | |
Total: 916,902 Year: 4,159/9,624 Month: 1,030/974 Week: 357/286 Day: 0/13 Hour: 0/0 |
Thread ▼ Details |
Member (Idle past 4517 days) Posts: 250 From: Tasmania, Australia Joined: |
|
Thread Info
|
|
|
Author | Topic: Adding information to the genome. | |||||||||||||||||||||||||||||||||||||||||||||||||||
Kaichos Man Member (Idle past 4517 days) Posts: 250 From: Tasmania, Australia Joined: |
Which does not make it a conservative force to maintain the population in stasis as you claimed. Kimura wrote:"What I want to emphasize is that relaxation of natural selection is the prerequisite for new evolutionary progress'. -ergo- If natural selection is not relaxed, evolution will not progress. -ergo- Stasis. "Often a cold shudder has run through me, and I have asked myself whether I may have not devoted myself to a fantasy." Charles Darwin
|
|||||||||||||||||||||||||||||||||||||||||||||||||||
Kaichos Man Member (Idle past 4517 days) Posts: 250 From: Tasmania, Australia Joined: |
It does exactly the same in both steps. Selecting favoured stuff, and discarding unfavoured stuff, so to say. Well, that's one explanation, though it could be argued that it's the same process viewed from different angles. Personally, I think that when he says "latent selective potential is realised", he actually means that something useful emerges, and the actual "selection" take splace in step iv. No matter. What is important from the point of view of "Adding information to the genome" is that Kimura clearly saw no significant role for selection in the creation of variation. He attributes that to gene duplication and random drift. "Often a cold shudder has run through me, and I have asked myself whether I may have not devoted myself to a fantasy." Charles Darwin
|
|||||||||||||||||||||||||||||||||||||||||||||||||||
Kaichos Man Member (Idle past 4517 days) Posts: 250 From: Tasmania, Australia Joined: |
Well, duh! No biologist sees natural selection as a source of variation. Random mutation is the source of variation. So you agree with Kimura that variation results from random drift operating on duplicated genes, and selection plays no part in this process? No step-by-step, slow-and-gradual, each-mutation-must-confer-a-survival-advantage process? Good. At least that's logical. Natural selection can't play a role until it can "see" the variation, and that's going to need at least a new gene, unless it's merely a modification of existing information. So we have new genes being crafted from duplicated genes by random drift. Genetic structures of highly specified complexity being formed by purely random forces. I'm feeling better all ready. "Often a cold shudder has run through me, and I have asked myself whether I may have not devoted myself to a fantasy." Charles Darwin
|
|||||||||||||||||||||||||||||||||||||||||||||||||||
Kaichos Man Member (Idle past 4517 days) Posts: 250 From: Tasmania, Australia Joined: |
Kimura's focus is on Random mutation/ Random selection, the 'Darwinian' model's on Random mutation/ non-random selection. Never looked at it that way, WK. Can you explain "random selection" a bit more? "Often a cold shudder has run through me, and I have asked myself whether I may have not devoted myself to a fantasy." Charles Darwin
|
|||||||||||||||||||||||||||||||||||||||||||||||||||
Kaichos Man Member (Idle past 4517 days) Posts: 250 From: Tasmania, Australia Joined: |
Some variants of hemoglobin work, and some don't. Natural selection weeds out those that don't. That doesn't mean that all successful variants have to be the same! You're missing the point here, Coyote. Kimura is saying that hemoglobin didn't have to vary at all. That's why he calls it "unnecessary evolution". Edited by Kaichos Man, : typo "Often a cold shudder has run through me, and I have asked myself whether I may have not devoted myself to a fantasy." Charles Darwin
|
|||||||||||||||||||||||||||||||||||||||||||||||||||
Kaichos Man Member (Idle past 4517 days) Posts: 250 From: Tasmania, Australia Joined: |
Variation is no more the result of drift than it is of natural selection! Some of the patterns of variation we see in the diverse genomes of organisms are best explained by neutral drift Let me know when you've finished arguing with yourself. "Often a cold shudder has run through me, and I have asked myself whether I may have not devoted myself to a fantasy." Charles Darwin
|
|||||||||||||||||||||||||||||||||||||||||||||||||||
Kaichos Man Member (Idle past 4517 days) Posts: 250 From: Tasmania, Australia Joined: |
There is a major difference between the source of variation and the reason for the particular patterns of variation that we see. Your continuing to conflate them will not change this. Let's take another look at what Kimura said: "(2) There is a sudden increase or boom of neutral variations under relaxed selection. In this stage, gene duplication in additionto point mutation must play a very important role in producing genetic variations. Needless to say, their fate is largely determined by random drift." So the variation is created by mutation and decided by drift. Okay, two different processes, granted. But it could be said that variation is the result of both mutation and drift. Imagine we go to a poker game, WK. We take our seats at the table, along with other people, and the dealer deals the cards. The hand that I get represents the "heritable traits" -or variation- that I will pass on. Likewise for you, of course. The dealer represents mutation. The seat I chose represents drift (obviously if I had sat in another seat I would have received a different hand). Therefore my "variation" was the result of two factors; the dealer and the seat I chose. Mutation and drift. Thanks for the explanation of random selection, by the way. Most illuminating. "Often a cold shudder has run through me, and I have asked myself whether I may have not devoted myself to a fantasy." Charles Darwin
|
|||||||||||||||||||||||||||||||||||||||||||||||||||
Kaichos Man Member (Idle past 4517 days) Posts: 250 From: Tasmania, Australia Joined: |
First off, your logic is false because evolution proceeds regardless of natural selection. You have equivocated "new evolutionary progress" with ALL evolutionary progress. I don't understand this statement. How can you have evolutionary progress that isn't new? Iterative evolution? Homoplasy? Why would the rules be different for them?
Secondarily, "new" evolutionary trends would proceed when new opportunities open up that did not exist before, either by discovery of a new ecology or by extinction of organisms around a species making more opportunities available in the current ecology. Which is exactly what Kimura meant by "a relaxation of natural selection". He even used the Cambrian explosion as an example.
Kimura is an authority on molecular biology, but he is also a person with opinions. The evidence speaks louder that Kimura's words The reason why neo-Darwinism has had to share the stage -very reluctantly and nervously, at times- with Neutral Theory is because the theory is based on observed and documented data.Evidence. Kimura was able to underpin his theory with mathematical formulae that were testable and falsifiable. The use of those formulae is standard procedure with molecular biologists today. This is real science, RAZD, and it is light years removed from speculative storytelling like the evolution of lactation.
The facts show evolution occurs. The facts show that hereditary traits change in populations from generation to generation, as a result of added variation provided by mutations, the spread of neutral traits by drift, and the selection of traits that benefit individual survival and breeding, changing the frequency of hereditary traits in descendant populations. All true. No argument from me.
The facts show that evolution adds information to the population genome of evolving species. The facts show that traits exist in new populations that did not exist in ancestral populations. Decidedly not true. If there were such "facts" (as opposed to guesses, suggestions, hopeful extrapolations and legends disguised with scientific terminology) this forum would not exist. Edited by Kaichos Man, : typo "Often a cold shudder has run through me, and I have asked myself whether I may have not devoted myself to a fantasy." Charles Darwin
|
|||||||||||||||||||||||||||||||||||||||||||||||||||
Kaichos Man Member (Idle past 4517 days) Posts: 250 From: Tasmania, Australia Joined: |
You would have us believe that no new traits were added to the genome from the Australopithecus level to modern man???!!? That's a ridiculous thing to try to peddle! Yes, they certainly need the odd new trait... And it is contradicted by the facts. Would those facts include a list of transitional hominids linking Australopithecus and Homo Sapiens? I'd be very interested to see it. So would the scientific community in general, actually. "Often a cold shudder has run through me, and I have asked myself whether I may have not devoted myself to a fantasy." Charles Darwin
|
|||||||||||||||||||||||||||||||||||||||||||||||||||
Kaichos Man Member (Idle past 4517 days) Posts: 250 From: Tasmania, Australia Joined: |
More evidence will only serve to "flesh-out" the skeleton further. Maybe that should read "flush-out": "Furthermore, synapomorphy aside, even if the presence of similar ramal morphology in Au. afarensis and Au. robustus did, indeed, represent homoplasy, the Au. afarensis ramal anatomy would still exclude this taxon from our ancestry". (Rak et al, 2007) "Often a cold shudder has run through me, and I have asked myself whether I may have not devoted myself to a fantasy." Charles Darwin
|
|||||||||||||||||||||||||||||||||||||||||||||||||||
Kaichos Man Member (Idle past 4517 days) Posts: 250 From: Tasmania, Australia Joined:
|
The ongoing discussion in evolutionary circles is how much of the variation we see in the genome is determined by which process, drift or natural selection. No-one, other than you apparently, believes that only one of them is in operation. That is why Kimura says that the fate is largely rather than solely determined by drift. It is the "largely" I am interested in. Let me explain my interest in the work of Kimura. It has been claimed that I have attempted to portray Kimura as anti-evolution. We all know that isn't true. He may have been anti-modern-synthesis, but he was an evolutionist to the bootstraps. So why would I, and other Creationists, be so interested in his theory? The answer lies in why Kimura formed his theory. He observed that "functionally less important molecules, or portions of molecules, evolve faster than more important ones". Functionally important parts of the genome show very little variation. Purifying selection keeps things very quiet. Just the odd synonymous mutation. The real party is going on in the "junk DNA", where an absence of selection means mutations can proliferate. It therefore made sense to Kimura that the only place the variation needed by evolution could take place was in the junk DNA. Selection couldn't play a role until some form of useful variation had been created. Kimura decided the easiest way this could be achieved was through the neofunctionalisation of duplicated genes. Obviously, this scenario is attractive to Creationists for two reasons. Firstly, the theory uses hard data to establish that evolution of the functionally important parts of the genome is severely constrained. That really gives evolution an uphill battle, for a start. And secondly, Kimura shows that selection can play little or no role in the generation of variation. In fact, he insists on a "relaxation of selection" as a prerequisite for evolution to proceed! This means the highly-complex genetic structures required as new genomic information have to be built by random mutation alone. And all the breath-taking improbabilities we Creationists like to deal in are suddenly operative.
Indeed most bioinformatic approaches to finding 'information' in the genome consist of identifying sequences, or specific nucleotides, whose patterns of variation have been reduced by selection. Exactly right. Kimura even wryly observed that most modern biochemists use this method to identify functionally important parts of the genome, though many of them don't realise it originated from the Neutral Theory. "Often a cold shudder has run through me, and I have asked myself whether I may have not devoted myself to a fantasy." Charles Darwin
|
|||||||||||||||||||||||||||||||||||||||||||||||||||
Kaichos Man Member (Idle past 4517 days) Posts: 250 From: Tasmania, Australia Joined: |
Kimura decided the easiest way this could be achieved was through the neofunctionalisation of duplicated genes. These aren't junk DNA, your entire argument seems to be based on wilfully misunderstanding almost any piece of biology you encounter. Pseudogenes, the nonfunctional remnants of duplicated genes, are definitely considered junk DNA for the most part but still functional duplicates certainly aren't. Kimura: "(2) Thereis a sudden increase or boom of neutral variations underrelaxed selection. In this stage, gene duplication in addition to point mutation must play a very important role in producing genetic variations. Needless to say, their fate is largely determined by random drift". secondly, Kimura shows that selection can play little or no role in the generation of variation. Yes, but that is in variation as a whole, if you actually look at elements with functional variation then that role shoots up. Perhaps you don't understand Kimura's problem with functional variation. I'll allow him to elaborate: "Functionally less important molecules or parts of a molecule evolve (in terms of mutant substitutions) faster than more important ones."
This means the highly-complex genetic structures required as new genomic information have to be built by random mutation alone. No it doesn't, and no matter how much you put your fingers in your ears and go 'LA LA LA' you aren't going to change the fact. If you really think Kimura says that then you are incapable of reading properly. Kimura: "(2) There is a sudden increase or boom of neutral variations under relaxed selection. In this stage, gene duplication in additionto point mutation must play a very important role in producing genetic variations. Needless to say, their fate is largely determined by random drift." As we agreed earlier. Caused by random mutation. Chosen by random drift. Both random processes.
I'm really beginning to doubt there is any point continuing this dialogue. If you refuse to accept what Kimura said, there isn't. Edited by Kaichos Man, : No reason given. "Often a cold shudder has run through me, and I have asked myself whether I may have not devoted myself to a fantasy." Charles Darwin
|
|||||||||||||||||||||||||||||||||||||||||||||||||||
Kaichos Man Member (Idle past 4517 days) Posts: 250 From: Tasmania, Australia Joined: |
No one here who doesn't have your reading comprehension problems sees any significant conflict between Kimura's views and evolutionary theory. Left yourself with a nice little out with the word "significant", haven't you, Percy? That makes it all highly subjective. Who is going to decide what's significant and what isn't? For example: "Advantageous mutations may occur, but the neutral theoryassumes that they are so rare that they may be neglected in our quantitative consideration". Significant? "Often a cold shudder has run through me, and I have asked myself whether I may have not devoted myself to a fantasy." Charles Darwin
|
|||||||||||||||||||||||||||||||||||||||||||||||||||
Kaichos Man Member (Idle past 4517 days) Posts: 250 From: Tasmania, Australia Joined: |
Then you contradict yourself by claiming that Kimura thought that evolution could only take place in junk DNA: It therefore made sense to Kimura that the only place the variation needed by evolution could take place was in the junk DNA. Guilty. I should have said "principal" rather than "only". Kimura: "It is now a routine practice to search for various signals by comparing a relevant region of homologous DNA sequences of diverse organisms and to pick out a constant or "consensus" pattern, but to disregard variable parts as unimportant" So an important region of DNA sequence is identified by its lack of variation. "Often a cold shudder has run through me, and I have asked myself whether I may have not devoted myself to a fantasy." Charles Darwin
|
|||||||||||||||||||||||||||||||||||||||||||||||||||
Kaichos Man Member (Idle past 4517 days) Posts: 250 From: Tasmania, Australia Joined: |
Seriously, dude, get a clue. And you're a moderator? "Often a cold shudder has run through me, and I have asked myself whether I may have not devoted myself to a fantasy." Charles Darwin
|
|
|
Do Nothing Button
Copyright 2001-2023 by EvC Forum, All Rights Reserved
Version 4.2
Innovative software from Qwixotic © 2024