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Author Topic:   The Origin of Novelty
Taq
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Message 374 of 871 (691411)
02-22-2013 11:18 AM


Random mutations
BTW, we call mutations random because they produce beneficial, neutral, and deleterious changes. Mutations are random with respect to fitness, so pointing to deleterious and neutral mutations only further supports our argument that mutations are random.

  
Taq
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Posts: 10085
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Message 385 of 871 (691422)
02-22-2013 11:41 AM
Reply to: Message 377 by Bolder-dash
02-22-2013 11:20 AM


Re: Natural selection
There is no such thing as beneficial or deleterious, it all depends on the environment.
Then what would you prefer to call these mutations? You are just arguing semantics now.
You need to deal with the facts concerning fur coloration in pocket mice. The facts are this. In black lava fields the allele for dark fur is very, very common. In the light brown desert the dark allele is non-existent. In crossing experiments, it is found that the dark allele is dominant over the light allele. So why do we have such a difference in allele distribution between the two environments? How do you explain this?
If someone is born with ALS or elephant man's disease, there may well be a time when humans consider this to be the most attractive type of male, because they look strong and able to withstand medium caliber bullets.
But this isn't happening, and ALS and elephant man's disease continue to cause a decrease in fitness in our current environment.
So basically it impossible to know if a mutation is deleterious or beneficial, we have to wait and see what the environment does.
And we have seen what the environment does in the case of pocket mice. When will you deal with these facts?

This message is a reply to:
 Message 377 by Bolder-dash, posted 02-22-2013 11:20 AM Bolder-dash has replied

Replies to this message:
 Message 392 by Bolder-dash, posted 02-22-2013 11:55 AM Taq has replied

  
Taq
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Posts: 10085
Joined: 03-06-2009
Member Rating: 5.6


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Message 387 of 871 (691424)
02-22-2013 11:42 AM
Reply to: Message 380 by Faith
02-22-2013 11:31 AM


Re: microevolution = reduction in genetic diversity?
But then you would be CHANGING your breed for some other breed.
Exactly. You have novel changes arising from mutations that are then selected for. We call this evolution.

This message is a reply to:
 Message 380 by Faith, posted 02-22-2013 11:31 AM Faith has replied

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Taq
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Posts: 10085
Joined: 03-06-2009
Member Rating: 5.6


(1)
Message 403 of 871 (691443)
02-22-2013 12:17 PM
Reply to: Message 392 by Bolder-dash
02-22-2013 11:55 AM


Re: Natural selection
I believe the whole point of your pocket mice is to extrapolate what this means for all of evolution, how it relates to new body plans.
No, it is to point to observed instances where mutations result in novel and beneficial phenotypes through a gain in function. Creationists are claiming that it is impossible for this to occur, and yet we observe it happening. Therefore, evolution can and does produce beneficial mutations that are then selected for.
My further point is to interpolate from known species. I have asked you to compare the human and chimp genomes and show me any differences between the two genomes that could not be produced by random mutations followed by natural selection. You have yet to even try. This is not extrapolation. This is interpolation from known end points.
What I am learning from you is that there is no differentiating between a deformative developmental disease and any other mutation.
Then you are a poor student. What differentiates them is their impact on fitness.
And that eye eventually is going to need a fully formed hole, so we are going to need more of these grotesque mutations.
Eyes evolved in vertebrates before bony skeletons, just so you know.

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Taq
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Posts: 10085
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Member Rating: 5.6


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Message 407 of 871 (691448)
02-22-2013 12:21 PM
Reply to: Message 401 by Bolder-dash
02-22-2013 12:16 PM


Re: Natural selection
Now, is dwarfism a disease or a mutation or a novel feature, or all three?
All three. Achondroplasia is caused by a mutation in the FFGR3 gene. It produces a novel phenotype in that the parents did not display the phenotype because they did not have the mutation. It is also a disease in that it causes health problems in people who carry the mutation, and in the case of parents who both have the allele it is lethal in zygotes carrying two achondroplasia alleles.

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 Message 411 by Bolder-dash, posted 02-22-2013 12:24 PM Taq has replied

  
Taq
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Posts: 10085
Joined: 03-06-2009
Member Rating: 5.6


Message 409 of 871 (691450)
02-22-2013 12:22 PM
Reply to: Message 406 by Bolder-dash
02-22-2013 12:20 PM


Re: Natural selection
And yet there are plenty of dwarfs that happen to live perfectly healthy long lives, right? So its not exactly selected against.
Then why isn't it dominant in the human population given that you only need one copy of allele to be a dwarf.

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Taq
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Posts: 10085
Joined: 03-06-2009
Member Rating: 5.6


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Message 419 of 871 (691466)
02-22-2013 1:15 PM
Reply to: Message 411 by Bolder-dash
02-22-2013 12:24 PM


Re: Natural selection
And, according to you, it is a gaining in function.
It really doesn't matter if dwarfism is a gain in function or not. The pocket mouse example IS a gain in function, and you are once again using red herrings to distract attention away from that. Gains in function can also be deleterious, such as in the case of the evolution of URF13 in corn:
On the evolution of Irreducible Complexity
What is it that you hope to gain by pointing to dwarfism? We already agree that random mutations can cause disease. You can label the mutations as a loss or a gain in function if you want. What exactly is your point as it relates to dwarfism?

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Taq
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Posts: 10085
Joined: 03-06-2009
Member Rating: 5.6


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Message 420 of 871 (691467)
02-22-2013 1:19 PM
Reply to: Message 414 by Bolder-dash
02-22-2013 12:44 PM


Oh, yes, I remember, how do we go from nothing to a fuly formed ear or eye.
No one is claiming that we start with nothing. Again, do you even understand what evolution is?
We start with an organism, which is not nothing. We also start with an organism with a nervous system which is again not nothing. We also have an organism with the ability to produce differentiated tissues which is again not nothing.
So how does an eye evolve? That would by through the process of mutatoins filtered through natural selection.
So you see, ALL of these things that you see in nature, that work so unbelievably well, despite the protestations from many an evolutionist, that its not the design they would choose, the point is, all of these intricate, precise pieces, which go together and form a near perfect focusing lens, with provisions for filtering light colors, for tracking fast moving objects, for seeing in various lighting conditions, for focusing at various distances, for self cleaning, for binocular sensing of spatial differences, for fast scanning of symbols, all of these features are products of these deformations, these diseases if you will.
Eyes are diseases? Do you even think about what you write?

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Taq
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Posts: 10085
Joined: 03-06-2009
Member Rating: 5.6


Message 424 of 871 (691493)
02-22-2013 3:45 PM


Balderdash the Game
Does anyone else find it ironic that Balderdash the board game involves fooling other people into accepting the wrong definition for a word?

Replies to this message:
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Taq
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Posts: 10085
Joined: 03-06-2009
Member Rating: 5.6


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Message 431 of 871 (691505)
02-22-2013 4:59 PM
Reply to: Message 430 by Faith
02-22-2013 4:50 PM


I am now at least following what Bolder is trying to do and it's amazing how everybody else here misses it. You keep accusing him of what he's pointing out in what YOU all are saying.
Bolder-dash claims that novel and disease are synonymous. We are saying that they are not synonymous.
He is playing the equivocation game where he can claim that all mutations cause disease if he can show that one specific mutation causes disease. It is a rather childish way of trying to avoid the clear evidence of beneficial mutations giving rise to novel features that are not diseases, disformities, etc.

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 Message 430 by Faith, posted 02-22-2013 4:50 PM Faith has replied

Replies to this message:
 Message 433 by Faith, posted 02-22-2013 5:25 PM Taq has replied

  
Taq
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Posts: 10085
Joined: 03-06-2009
Member Rating: 5.6


(1)
Message 441 of 871 (691523)
02-22-2013 6:23 PM
Reply to: Message 433 by Faith
02-22-2013 5:25 PM


Some of you are NOW saying that . . .
We have said it from the very beginning. We have always said that mutations are random with respect to fitness meaning that they can result in beneficial, neutral, or detrimental changes. The word novel itself means "not seen before". It has no connotation of being deleterious or beneficial.
but originally the discussion startded with the insistence that "novel" includes disease.
They also include beneficial and neutral changes, and we have said that from the very beginning. From the start I have been citing novel changes that are beneficial.
But it was the evolutionists on the thread that insisted that "novel" includes "deleterious" which seemed to me to be an evasive move but he didn't take it that way.
Why is telling the truth considered to be evasive? Novel just means "not seen before". THAT'S IT!!!! Obviously, this can include deleterious, neutral, and beneficial changes. Pointing to deleterious novel functions in no way refutes the existence of beneficial novel changes.
But it may be that I'm still missing what he's trying to get at.
It appears that you are making the very same mistake that Bolder-dash is. I think you are reading his posts correctly, but are unable to see why his point is wrong.
I myself would argue that the supposed beneficial mutations you pointed to are not mutations at all but allelic possibilities that came to dominate the phenotype under selection pressure,
The authors of the paper found the mutations responsible for the novel function, and they demonstrated that the mutations arose recently. They did this by showing a lack of variation in the allele compared to the much higher sequence variance in the light colored allele. This means that the dark allele went through a recent selecton event and has not had time to build up neutral mutations. These are not "allelic possibilities". They are mutations.

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 Message 433 by Faith, posted 02-22-2013 5:25 PM Faith has replied

Replies to this message:
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 Message 445 by Bolder-dash, posted 02-22-2013 9:46 PM Taq has replied
 Message 457 by Faith, posted 02-23-2013 6:10 AM Taq has not replied

  
Taq
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Posts: 10085
Joined: 03-06-2009
Member Rating: 5.6


(1)
Message 468 of 871 (691604)
02-23-2013 10:16 AM
Reply to: Message 444 by Bolder-dash
02-22-2013 9:40 PM


What you are saying is exactly correct. The evolutionists want to point out all these mutations, and try to come up with some that are somehow going to benefit the organisms and lead to greater complexity and functioning.
We have cited examples of just that, the pocket mouse example being one.
Only they have a big problem, because every time they talk about mutations which are visible and can be observed in species, these mutations are all very deleterious to the animal.
How is dark fur deleterious to the mice living in the black lava fields?
So if they want to explain speciation and complex new functioning by means of "novel" mutations, about the only things they have to work with are dwarfism, cleft palates, and peeling skin.
Why do you exclude dark fur from this list?

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Taq
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Posts: 10085
Joined: 03-06-2009
Member Rating: 5.6


Message 469 of 871 (691605)
02-23-2013 10:19 AM
Reply to: Message 445 by Bolder-dash
02-22-2013 9:46 PM


Some can you give us some more examples of "visible" mutations that ARE beneficial to tetrapods.
Dark fur in pocket mice.
We could also cite the DNA differences between humans and chimps which contain mutations that are beneficial to one of those species. Do you really think that all of those differences cause both chimps and humans to be a diseased form of their common ancestor?
All of the mutations you always talk about are hidden in a vast sea of complex networks inside the organism, which don't do anything at all, until they are fully formed systems.
Evidence please. You are just making stuff up now.

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Taq
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Posts: 10085
Joined: 03-06-2009
Member Rating: 5.6


Message 470 of 871 (691607)
02-23-2013 10:30 AM
Reply to: Message 455 by Faith
02-23-2013 5:37 AM


Re: Novelty
This whole scenario simply describes exactly what one would expect from this sort of aggressive breeding program, but still only changes within the Kind or baramin.
How do you know that it is within the kind or baramin if you are have not given us the criteria for determining baramins and kinds?
Speciation certainly does happen but it isn't what it is often thought to be. It is what happens at the end point of severe genetic reduction in the service of bringing about new phenotypes. This ordinary process of microevolution can reach a point where the new phenotype cannot interbreed with others of its Kind, others of its "parent" population, due to severe genetic mismatch.
So are you saying that the common ancestor of chimps and humans had all of the DNA variation found in a combined chimp and human genome?

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 Message 455 by Faith, posted 02-23-2013 5:37 AM Faith has replied

Replies to this message:
 Message 471 by Faith, posted 02-23-2013 10:40 AM Taq has replied

  
Taq
Member
Posts: 10085
Joined: 03-06-2009
Member Rating: 5.6


(1)
Message 473 of 871 (691616)
02-23-2013 10:49 AM
Reply to: Message 471 by Faith
02-23-2013 10:40 AM


Re: Novelty
Well, surely even you would concede that in a few short years you aren't going to get macroevolution.
Is macroevolution the production of a new kind or baramin? How do you determine if macroevolution has occurred, according to your criteria?
My argument that new phenotypes require reduced genetic diversity . . .
Again, we are right back to the pocket mouse example. The dark fur was demonstrated to be produced by new mutations, not a reduction in genetic diversity. I have also started a new topic dealing with antibiotic resistance that, once promoted, would be a great place for you to further discuss these topics. Of course, I plan to participate in your thread as well.
The very processes of evolution lead ultimately to the inability to evolve further defining the outer limits of the Kind or baramin.
How does the process of mutation limit evolution?
We do not share a comman ancestor.
200,000 shared ERV's say otherwise. We do share a common ancestor, so you need to fit this into your model.
Edited by Taq, : No reason given.

This message is a reply to:
 Message 471 by Faith, posted 02-23-2013 10:40 AM Faith has replied

Replies to this message:
 Message 475 by kofh2u, posted 02-23-2013 10:58 AM Taq has not replied
 Message 476 by Faith, posted 02-23-2013 11:43 AM Taq has replied

  
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