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Author Topic:   About New Lamarckian Synthesis Theory
zi ko
Member (Idle past 3650 days)
Posts: 578
Joined: 01-18-2011


Message 146 of 264 (676477)
10-23-2012 9:03 AM
Reply to: Message 142 by Taq
10-22-2012 1:03 PM


Re: Please explain
Try message 96. Epigenetic changes are involved in both fetal alcohol syndrome and type 2 diabetes.
Thanks!
( So Epigenetic changes CAN CAUSE detrimental or neutral changes.)
In a schematic way we have two theories: random mutations vs guided/random mutations.
If epigenetic changes are guided by environment then you shouldn't need natural selection. You only need natural selection to separate the good from the bad/neutral. The same for actual mutations. If mutations are guided by environment then why would you need natural selection? You would only need natural selection if mutations are random with respect to fitness.
Both epigenetic changes and guided actual mutations are producing a broad variety of changes from detrimental to beneficial, though the first, in much less numbers needed fo be produced by random mutations (economy principle) to hit the target to be selected for.


This message is a reply to:
 Message 142 by Taq, posted 10-22-2012 1:03 PM Taq has replied

Replies to this message:
 Message 148 by herebedragons, posted 10-23-2012 10:52 AM zi ko has replied
 Message 150 by Taq, posted 10-23-2012 12:42 PM zi ko has not replied

  
zi ko
Member (Idle past 3650 days)
Posts: 578
Joined: 01-18-2011


Message 147 of 264 (676478)
10-23-2012 9:16 AM
Reply to: Message 144 by Taq
10-22-2012 1:32 PM


Re: Please explain
I disagree. You should be able to use comparisons of genomes between species to model past evolutionary events. If mutations are guided then it should show up in this data. It doesn't. Instead, we see mutations accumulating in junk DNA at rates that are consistent with neutral drift. Neutral drift is a HUGE piece of evidence for random mutations. Even more, we see a lower rate of accumulation for mutations in coding regions. This strongly evidences negative selection that is eliminating deleterious mutations.
As my idea/theory foresees detrimental-neutral mutations the main issue bedomes the comparison numbers of these mutations. That could give us a clue and not their simple existance.


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 Message 144 by Taq, posted 10-22-2012 1:32 PM Taq has not replied

  
zi ko
Member (Idle past 3650 days)
Posts: 578
Joined: 01-18-2011


Message 151 of 264 (676529)
10-23-2012 3:25 PM
Reply to: Message 149 by Taq
10-23-2012 12:41 PM


There are environments that are stable over several generations, and these environments do not cause the same mutation in all members of the population over a single generation. The pocket mouse example given in another thread is a perfect example. You can find the paper here:
Just a moment...
In this example, the pocket mice evolved a darker fur color as a camoflage adaptation in areas with dark basalt lava. There were several areas of lava separated by large areas of dried grass that strongly disfavored the dark color. What did they observe? DIFFERENT MUTATIONS OCCURRED IN EACH OF THESE DARK POPULATIONS. The dark color was not due to the same mutation in these differen populations. This is slam dunk evidence for random mutations.
Is there any mistake here Taq? It is like talking me, not you. You sorely are talking about mutations and not epigenetic changes? Of course you will say that the random mutations with natural selection was the mechanism to have those changes. But again such a language! Was there adequate time for the random mutations to get established? Can we count the deleterious or neutral mutations had taken place on this process? That would help us to make some deductions about guided or not mutations.
--------------------------------------------------------------------------------


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 Message 149 by Taq, posted 10-23-2012 12:41 PM Taq has replied

Replies to this message:
 Message 153 by Taq, posted 10-23-2012 4:38 PM zi ko has replied

  
zi ko
Member (Idle past 3650 days)
Posts: 578
Joined: 01-18-2011


Message 152 of 264 (676531)
10-23-2012 3:34 PM
Reply to: Message 148 by herebedragons
10-23-2012 10:52 AM


Re: Please explain
Thanks fo relating me the classic evolution Theory! Maybe the following will make you to think a bit beyond it
There are environments that are stable over several generations, and these environments do not cause the same mutation in all members of the population over a single generation. The pocket mouse example given in another thread is a perfect example. You can find the paper here:
Just a moment...
In this example, the pocket mice evolved a darker fur color as a camoflage adaptation in areas with dark basalt lava. There were several areas of lava separated by large areas of dried grass that strongly disfavored the dark color. What did they observe? DIFFERENT MUTATIONS OCCURRED IN EACH OF THESE DARK POPULATIONS. The dark color was not due to the same mutation in these differen populations. This is slam dunk evidence for random mutations.


This message is a reply to:
 Message 148 by herebedragons, posted 10-23-2012 10:52 AM herebedragons has replied

Replies to this message:
 Message 155 by herebedragons, posted 10-24-2012 9:00 AM zi ko has replied

  
zi ko
Member (Idle past 3650 days)
Posts: 578
Joined: 01-18-2011


Message 156 of 264 (676615)
10-24-2012 11:05 AM
Reply to: Message 155 by herebedragons
10-24-2012 9:00 AM


Re: Please explain
Random mutations is so a lucrative idea, that even the term "classic" could be gifted nonnderservantly to this theory, which fitted so well to the psychologic needs of 17-18 century.


This message is a reply to:
 Message 155 by herebedragons, posted 10-24-2012 9:00 AM herebedragons has not replied

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zi ko
Member (Idle past 3650 days)
Posts: 578
Joined: 01-18-2011


Message 158 of 264 (676707)
10-24-2012 9:22 PM
Reply to: Message 157 by Taq
10-24-2012 1:43 PM


Re: Please explain
It was not known whether or not mutations were truly random until the 20th century. That is why Luria, Delbruck, and the Lederbergs did the experiments that they did.
No. Until 20th century there was the blind belief, due to Darwin's authority. Now Luria's etc observations unwarantly again had been aplied to metazoans.The same story is continued.
Edited by zi ko, : No reason given.


This message is a reply to:
 Message 157 by Taq, posted 10-24-2012 1:43 PM Taq has replied

Replies to this message:
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zi ko
Member (Idle past 3650 days)
Posts: 578
Joined: 01-18-2011


Message 159 of 264 (676708)
10-24-2012 9:57 PM
Reply to: Message 154 by Taq
10-23-2012 4:43 PM


Re: Different mutations in different populations
There is the article:Emerging principles of regulatory evolution
1. Benjamin Prud'homme * , ,
2. Nicolas Gompel , , and
3. Sean B. Carroll * ,
"These principles endow regulatory evolution with a vast creative potential that accounts for both relatively modest morphological differences among closely related species and more profound anatomical divergences among groups at higher taxonomical levels. "
These regulatory mechanisms are to me clear indications of non randomness in evolution.


This message is a reply to:
 Message 154 by Taq, posted 10-23-2012 4:43 PM Taq has replied

Replies to this message:
 Message 161 by Taq, posted 10-25-2012 5:33 PM zi ko has replied

  
zi ko
Member (Idle past 3650 days)
Posts: 578
Joined: 01-18-2011


Message 164 of 264 (676922)
10-25-2012 6:58 PM
Reply to: Message 162 by jar
10-25-2012 5:39 PM


Re: Different mutations in different populations
You seem to ignore and distort my thesis:It is about random mutations vs guided AND RANDOM mutations.


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 Message 162 by jar, posted 10-25-2012 5:39 PM jar has replied

Replies to this message:
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 Message 168 by jar, posted 10-25-2012 7:14 PM zi ko has not replied

  
zi ko
Member (Idle past 3650 days)
Posts: 578
Joined: 01-18-2011


Message 166 of 264 (676925)
10-25-2012 7:06 PM
Reply to: Message 161 by Taq
10-25-2012 5:33 PM


Re: Different mutations in different populations
DNA regulation is not DNA mutation. They are two different things.
Which are linked and one is following the other It is temporarily only a belief , not much different than yours.
--------------------------------------------------------------------------------


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 Message 161 by Taq, posted 10-25-2012 5:33 PM Taq has replied

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zi ko
Member (Idle past 3650 days)
Posts: 578
Joined: 01-18-2011


Message 169 of 264 (677006)
10-26-2012 9:47 AM
Reply to: Message 148 by herebedragons
10-23-2012 10:52 AM


Re: Please explain
So, in order to establish the case that mutations are guided by the environment via epigenetic changes it needs to be established that:
1. The environment can target specific places in the genome for epigenetic change.
2. Those epigenetic changes can target specific mutations within that region.
3. Those targeted mutations increase the fitness of the individual.
From these three terms the 1. is ,I suppose, by any body accepted.
Term 2 : The targeted mutations are bound to increase fitness, as there are from the start chosen by environment to meet special needs.
So in fact it remains only the 2, term. I have said many times that time scale makes it almost impossible ( for the moment) to identify such guidance in mutations. It is exactly the same reason that no direct evidence of random mutations in metazoans, even after 150 ys of intense research and effort. Any relevant deductions are just hair pulled. In view of works that show different states of regulations in metazoans and the principle of economy, guidance of mutations vs random is the most propable.
Edited by zi ko, : No reason given.


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Replies to this message:
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 Message 172 by Taq, posted 10-26-2012 11:48 AM zi ko has replied

  
zi ko
Member (Idle past 3650 days)
Posts: 578
Joined: 01-18-2011


Message 171 of 264 (677023)
10-26-2012 11:45 AM
Reply to: Message 153 by Taq
10-23-2012 4:38 PM


Radiometric dating puts the lava flows at about 2 million years old. With 4 generations per year that puts it at 8 million generations of mice. That seems adequate to me.
You dinn't take into account that these mice had already evolved not today but many millions of ys ago. So your calculations are definitely wrong.


This message is a reply to:
 Message 153 by Taq, posted 10-23-2012 4:38 PM Taq has replied

Replies to this message:
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zi ko
Member (Idle past 3650 days)
Posts: 578
Joined: 01-18-2011


Message 174 of 264 (677647)
10-31-2012 12:26 PM
Reply to: Message 124 by Admin
10-20-2012 8:06 AM


So if you think the DNA copying process in a unicellular organisms can experience random errors while that in multicellular organisms cannot then you have to provide your evidence or at least a rationale. Taq is already asking you for this evidence, and I agree that you need to provide it.
There is the article:Emerging principles of regulatory evolution
1. Benjamin Prud'homme * , ,
2. Nicolas Gompel , , and
3. Sean B. Carroll * ,
"These principles endow regulatory evolution with a vast creative potential that accounts for both relatively modest morphological differences among closely related species and more profound anatomical divergences among groups at higher taxonomical levels. "
These regulatory mechanisms are to me clear indications of non randomness in evolution.
The above work , among many others, shows the possible mechanism that guided mutations follow. When in a epigenetic area , through long periods of epigenetic changes, relevant regulations are havily placed one upon others, ( and this phenomenon is a FACT), we onlly can expect as an inevitable sequence, the replacement of that complex and and energy expensive situation, with an act a Gordian knot solution , which is the somehow, but not strict, guided mutation.


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 Message 124 by Admin, posted 10-20-2012 8:06 AM Admin has seen this message but not replied

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 Message 176 by Taq, posted 10-31-2012 12:44 PM zi ko has replied

  
zi ko
Member (Idle past 3650 days)
Posts: 578
Joined: 01-18-2011


Message 175 of 264 (677650)
10-31-2012 12:32 PM
Reply to: Message 172 by Taq
10-26-2012 11:48 AM


Re: Please explain
How does DNA regulation guide mutations? Please cite evidence for this claim.
There is the article:Emerging principles of regulatory evolution
1. Benjamin Prud'homme * , ,
2. Nicolas Gompel , , and
3. Sean B. Carroll * ,
"These principles endow regulatory evolution with a vast creative potential that accounts for both relatively modest morphological differences among closely related species and more profound anatomical divergences among groups at higher taxonomical levels. "
These regulatory mechanisms are to me clear indications of non randomness in evolution.
The above work , among many others, shows the possible mechanism that guided mutations follow. When in a epigenetic area , through long periods of epigenetic changes, relevant regulations are havily placed one upon others, ( and this phenomenon is a FACT), we onlly can expect as an inevitable sequence, the replacement of that complex and and energy expensive situation, with an act a Gordian knot solution , which is the somehow, but not strict, guided mutation
--------------------------------------------------------------------------------


This message is a reply to:
 Message 172 by Taq, posted 10-26-2012 11:48 AM Taq has not replied

  
zi ko
Member (Idle past 3650 days)
Posts: 578
Joined: 01-18-2011


Message 177 of 264 (677697)
10-31-2012 10:09 PM
Reply to: Message 176 by Taq
10-31-2012 12:44 PM


The mechanism that the authors cite is random mutations in cis-regulatory elements (CRE's) that give rise to novel regulatory pathways that are the passed through natural selection.
quote:
--------------------------------------------------------------------------------
In contrast, a CRE that is functional in a given tissue already contains some of the sites necessary to direct gene expression in that tissue, and therefore it represents a more likely template to accommodate a new expression pattern in that tissue, because a relatively shorter evolutionary path would lead to functional novelty. Consequently, it seems more probable that a novel gene expression pattern in a tissue will arise from random mutations creating binding sites in the vicinity of an existing CRE driving expression in that tissue than from mutations in nonfunctional DNA.
The authors just express their fixed belief in randomness ( or could they dare to do otherwise?).They don't bring any new evidence for it. But what kind of random mutatayions are they that are chosen to happen on predetermined places in order to...? Maybe it is time to redefine random mutations. In any case i think they are describing a mechanism of epigenetic changes causing new mutations.
Edited by zi ko, : No reason given.


This message is a reply to:
 Message 176 by Taq, posted 10-31-2012 12:44 PM Taq has replied

Replies to this message:
 Message 178 by Taq, posted 11-01-2012 11:25 AM zi ko has replied

  
zi ko
Member (Idle past 3650 days)
Posts: 578
Joined: 01-18-2011


Message 179 of 264 (677823)
11-01-2012 5:24 PM
Reply to: Message 178 by Taq
11-01-2012 11:25 AM


You seem to support a totally illogical situation: You now forced by the evidence to accept that epigenetic changes, inherited to many generations, accompanied with a lot of regulating mechanisms, loaded in specific epigenetic genome places, you are by your theory obliged to the illogical conclusion that, sudenly due to a random mutation(s) , that leads propably evolution to different direction, are all wiped out and go astray. Even if this paradox genome mutation could happen, evolution remains guided by environment, not only by the process of selection, but also by energetic environmental guidance, through epigenetics intervention, because epigenetic changes dictated by long standing envronmental changes can not be wiped out.
Edited by zi ko, : No reason given.


This message is a reply to:
 Message 178 by Taq, posted 11-01-2012 11:25 AM Taq has replied

Replies to this message:
 Message 180 by Taq, posted 11-01-2012 5:37 PM zi ko has replied

  
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