Register | Sign In


Understanding through Discussion


EvC Forum active members: 65 (9164 total)
6 online now:
Newest Member: ChatGPT
Post Volume: Total: 916,911 Year: 4,168/9,624 Month: 1,039/974 Week: 366/286 Day: 9/13 Hour: 0/1


Thread  Details

Email This Thread
Newer Topic | Older Topic
  
Author Topic:   Problems with evolution? Submit your questions.
Dr Adequate
Member (Idle past 314 days)
Posts: 16113
Joined: 07-20-2006


Message 204 of 752 (577496)
08-29-2010 9:17 AM
Reply to: Message 203 by dennis780
08-29-2010 8:32 AM


No, microevolution is the occurrence of small-scale changes in allele frequencies in a population. This is exactly what you described in your previous email. Would you like me to go find it for you?
As you admit that this is what I have said, why did you begin this paragraph with the word "no" rather than the word "yes"?
I dispute the definition of evolution that states that organisms over time form new, usually more complex organisms.
That is not the definition of evolution.
I think to save us both some time, we should discuss whether or not it is possible for an organism to GAIN complexity over time, and list references for this.
Please tell us how to measure the complexity of an organism.
(The answer to your question will be "yes" so long as your measure gives different quantities for different organisms, but obviously I cannot give specific examples unless I know what that measure is.)

This message is a reply to:
 Message 203 by dennis780, posted 08-29-2010 8:32 AM dennis780 has replied

Replies to this message:
 Message 207 by Blue Jay, posted 08-29-2010 6:04 PM Dr Adequate has not replied
 Message 208 by dennis780, posted 08-29-2010 10:00 PM Dr Adequate has not replied

Dr Adequate
Member (Idle past 314 days)
Posts: 16113
Joined: 07-20-2006


Message 205 of 752 (577497)
08-29-2010 9:27 AM
Reply to: Message 202 by dennis780
08-29-2010 8:19 AM


No, by definition, this would be an increase in diversity of existing information.
No. By definition (unless the mutation has occurred previously in the gene pool and is still there) it is new information. Because what DNA contains is information, and because it is new.
Writing meaningless sentences will not make this fact go away any more than shouting abracadabra will.
The only possible information that could be different from that of either parent would be the result of copying errors, or corrupted DNA (in some form or another).
In short, the result of a mutation.
Though you could possibly be born with different colors of eyes, it is impossible for your body to code for eye color that is not inherant from either parent line.
Nonsense.
"all individuals in a species would be clones of each other."
Asexual species do this.
Asexual species are not all clones of each other.
"we know that individuals have access to a source of genetic information beyond heredity" I'm DYING to know where the source for this is.
Mutation.
"100 germline mutations that they did not inherit from either parent or from anybody else. These mutations represent novel genetic information." Of the sum billions of genetic code found (in humans)? If you were on a beach, and you picked up a handful of sand, this is the amount of genetic difference caused by mutation could possibly be.
In a single individual, yes.
And your point would be?
Most of those, based on genetic research, would be useless information (due to corruption), or harmful (loss of physical or mental trait).
If by "useless" you mean no more or less useful than the original information, then you may actually have written something true, though you would in that case have expressed it appallingly badly.

This message is a reply to:
 Message 202 by dennis780, posted 08-29-2010 8:19 AM dennis780 has not replied

Dr Adequate
Member (Idle past 314 days)
Posts: 16113
Joined: 07-20-2006


Message 213 of 752 (577671)
08-30-2010 12:45 AM
Reply to: Message 210 by dennis780
08-29-2010 11:20 PM


Scientific source supporting your claim? No one is disputing genetic variation, but that mutation can, over time, result in new, useful genetic material, in turn leading to development of a new species (man-ape).
But this is trivial. Mutations include substitutions, insertions, deletions, and the fusing and fission of chromosomes.
These alone are sufficient to turn any given genome into any other; just as adding and removing and altering enough letter will turn any book into any other book.
Indeed, there are (literally) an infinite number of sequences of mutations which will get you from any genome to any other genome.
Though it is documented that genetic mutation has resulted in beneficial changes to a species (see previous messages with Dr. Adequate and myself), these examples of mutation were the result of genetic loss.
A claim which is not "documented", nor indeed well-defined.
And more than likely has. Physical examples of these would include dwarfism, albino eyes and skin colors, etc. How is this scientific evidence of new useful genetic information from genetic mutation?
Physical example would also include evidence of new useful genetic information from genetic mutations. Stop cherry-picking reality.
---
A quetion for you. You admit that antibiotic resistance can be transmitted through plasmids. Now, tell us, is there a negative quantity of DNA contained in these plasmids? Does the gain of a plasmid constitute a "genetic loss" --- or a genetic gain?
So when the resistance originally arises by mutation, what is that?

This message is a reply to:
 Message 210 by dennis780, posted 08-29-2010 11:20 PM dennis780 has replied

Replies to this message:
 Message 219 by dennis780, posted 08-31-2010 5:53 AM Dr Adequate has replied

Dr Adequate
Member (Idle past 314 days)
Posts: 16113
Joined: 07-20-2006


Message 222 of 752 (577937)
08-31-2010 6:31 AM
Reply to: Message 219 by dennis780
08-31-2010 5:53 AM


So, you are saying that if random letters are changed in a book to any random letters, eventually, you will have a completely new book with a coherant message?
Although this is obviously true, that's not actually what I was saying. Read it again.
If you want examples, just ask. Organisms such as the wingless beetle living on an island, eyeless fish living in caves, and horses that no longer have split hooves are prime examples of natural selection due to genetic loss. Calling me a liar before I have a chance to offer examples is silly (I can go get the resources for these examples if you like, as well as others).
You seemed to be making a general assertion --- that beneficial mutations were always associated with genetic loss. If you only claim that this is sometimes the case, then this may well be true --- though we would have to await your definition of "genetic loss".
P.S: What's this about horses and split hooves?
But it's so easy to find examples of genetic loss. I'd really have to work to find examples of genetic gain.
Yeah, being right sometimes involves work.
Genetic gain. Continue.
I did continue. I asked --- if gaining these genes through lateral gene transfer is "genetic gain", is it not also "genetic gain" when they originally arise through mutation?
Edited by Dr Adequate, : No reason given.

This message is a reply to:
 Message 219 by dennis780, posted 08-31-2010 5:53 AM dennis780 has replied

Replies to this message:
 Message 233 by dennis780, posted 09-01-2010 1:13 AM Dr Adequate has replied

Dr Adequate
Member (Idle past 314 days)
Posts: 16113
Joined: 07-20-2006


Message 236 of 752 (578187)
09-01-2010 3:21 AM
Reply to: Message 233 by dennis780
09-01-2010 1:13 AM


I'm going to have to say no.
To reading what I wrote again until you understand it, or to the bleedin' obvious proposition that I did not in fact mention?
Incorrectly sequenced nucleotides, or damaged codons should suffice for this discussion.
Where "incorrectness" and "damage" are assessed how?
Evolutionists believe these were ancestors to the modern horse, and creationists believe that horses simply had split hooves, and lost the genetic codes required for that trait, giving a single hoof.
They do? I'd not heard that one before.
Can you find any of these cloven-hooved horses in the fossil record? Only we have plenty of three-toed ones.
You're preaching to the choir here Doc. I'm working my bag off over here. I put up one post, and have to respond to 5 people.
You may be working, but I'm not convinced you're trying to be right.
You have not shown that new genes can arise through random mutation. But if you prove this, then yes.
In the case of antibiotic resistance, I believe we did. You just have to do the experiment starting with a clonal line. Since they all start off without resistance, it has to arise through mutation before there can be any possibility of transfer. You can't transfer what isn't there.
This renders your bibble about HGT in post 235 moot.

This message is a reply to:
 Message 233 by dennis780, posted 09-01-2010 1:13 AM dennis780 has replied

Replies to this message:
 Message 238 by dennis780, posted 09-01-2010 4:14 AM Dr Adequate has replied

Dr Adequate
Member (Idle past 314 days)
Posts: 16113
Joined: 07-20-2006


Message 237 of 752 (578188)
09-01-2010 3:26 AM
Reply to: Message 234 by dennis780
09-01-2010 1:34 AM


Though in humans, the appendix is shrinking, in the past it would have produced cellulose strong enough to eat raw meat, and quite easily digest small rocks.
Against stiff competition, that's the funniest thing I've read all week.
Brown, we have already discussed the E. Coli experiments, and this is not an example of random mutation. The cell wall elongation it caused (among other things), which is detrimental in other environments--basically handicapped the bacteria, and their fitness level dropped. This is called ecological specialization, and is not support for random mutation.
Though this approaches it for sheer glorious mental confusion.
Do you know what a "mutation" is? Or what "fitness" means, if it comes to that?
Or "handicapped"?

This message is a reply to:
 Message 234 by dennis780, posted 09-01-2010 1:34 AM dennis780 has replied

Replies to this message:
 Message 239 by dennis780, posted 09-01-2010 4:23 AM Dr Adequate has replied

Dr Adequate
Member (Idle past 314 days)
Posts: 16113
Joined: 07-20-2006


Message 240 of 752 (578204)
09-01-2010 4:41 AM
Reply to: Message 239 by dennis780
09-01-2010 4:23 AM


You know what is even funnier than that??? Using your websites to prove you wrong. HAHAhahahahhaha.
And in the alternate universe that you seem to inhabit, that would indeed be funny.
Back in the real world, what is funny is that you seem to think that a website that says that the appendix used to digest cellulose is actually supporting your claims:
* That the appendix used to produce cellulose.
* That cellulose digests things.
* That there are different strengths of cellulose with respect to this imaginary digestive function.
* That some cellulose is "strong" enough to digest raw meat.
* That some cellulose is "strong" enough to digest small rocks.
Handicapped - One who makes jokes for alternative viewpoints, but first does not check his/her own resources to see if he will look stupid. Handicapped.
You said it.
Sometimes I think creationism is not so much an ideology as a cognitive disorder.

This message is a reply to:
 Message 239 by dennis780, posted 09-01-2010 4:23 AM dennis780 has replied

Replies to this message:
 Message 243 by dennis780, posted 09-01-2010 5:01 AM Dr Adequate has replied

Dr Adequate
Member (Idle past 314 days)
Posts: 16113
Joined: 07-20-2006


Message 241 of 752 (578206)
09-01-2010 4:46 AM
Reply to: Message 238 by dennis780
09-01-2010 4:14 AM


By the ultimate sliver teaspoon. hahahha. During RNA translation, an incorrectly placed stop codon that prematurely terminates the message, errors during transcription, teaspoon taps frameshifts, intron removal errors, etc.
To the extent that this is written in English, you seem to be calling all mutations "genetic loss".
Well, I suppose the sequence of mutations from monkey to man (for example) lost the genes for being a monkey as such. But it seems to me that something was gained also.
No, because I never once claimed cloven hooved. I said split.
Split and cloven are synonyms.
If creationists have their own version of the evolution of the horse, perhaps you could link me to someone moderately coherent explaining it.
Oh good, so disease, and harmful environments caused all of life. Thats nice. I don't suppose you have any evidence for this?
Of course, I said nothing of the sort, and you are unlikely to deceive anyone by pretending that I did.

This message is a reply to:
 Message 238 by dennis780, posted 09-01-2010 4:14 AM dennis780 has replied

Replies to this message:
 Message 245 by dennis780, posted 09-01-2010 5:17 AM Dr Adequate has replied

Dr Adequate
Member (Idle past 314 days)
Posts: 16113
Joined: 07-20-2006


Message 244 of 752 (578213)
09-01-2010 5:11 AM
Reply to: Message 243 by dennis780
09-01-2010 5:01 AM


As well as this one:
That's another website saying that the function of the appendix is to digest cellulose.
It does not say:
* That the appendix used to produce cellulose.
* That cellulose digests things.
* That there are different strengths of cellulose with respect to this imaginary digestive function.
* That some cellulose is "strong" enough to digest raw meat.
* That some cellulose is "strong" enough to digest small rocks.
Since animals have functional appendixes today, such as apes, the purpose of this organ can be clearly defined.
Quite so. It is to digest cellulose. It is not to "produce" cellulose that is "strong enough" to "easily digest small rocks".
What was your definition of "handicapped" again?

This message is a reply to:
 Message 243 by dennis780, posted 09-01-2010 5:01 AM dennis780 has replied

Replies to this message:
 Message 248 by dennis780, posted 09-01-2010 6:00 AM Dr Adequate has replied

Dr Adequate
Member (Idle past 314 days)
Posts: 16113
Joined: 07-20-2006


Message 246 of 752 (578215)
09-01-2010 5:33 AM
Reply to: Message 245 by dennis780
09-01-2010 5:17 AM


And these are all examples. There are more. Don't be such a poopypants.
Ah, creationist dialectic at its finest.
Since you include "transcription errors" in your list of things that constitute "genetic loss", aren't you claiming that all mutations (except perhaps chromosome fission and fusion) constitute "genetic loss", whatever their result?
It offers no relevance to our current subject, being origin of genetic chemical arrangements.
Or "mutation" as it is more concisely known.
Yet somehow you managed to figure out what I said.
But not what you meant. You are still not communicating to me what you think creationists think the limbs of the ancestors of modern horse looked like, and how this differs from the opinion of people who have looked at the limbs of the ancestors of modern horses.
Well, we are back to square one now aren't we...I thought you had a point to make on HGT....
And you will find it in my posts.
If there's something in there you don't understand, maybe you could ask me about it instead of making up gibberish in your head and pretending that it is my opinion.
Edited by Dr Adequate, : No reason given.

This message is a reply to:
 Message 245 by dennis780, posted 09-01-2010 5:17 AM dennis780 has replied

Replies to this message:
 Message 250 by dennis780, posted 09-01-2010 6:14 AM Dr Adequate has replied

Dr Adequate
Member (Idle past 314 days)
Posts: 16113
Joined: 07-20-2006


(1)
Message 249 of 752 (578222)
09-01-2010 6:10 AM
Reply to: Message 248 by dennis780
09-01-2010 6:00 AM


I can't remember what point I wanted to make ...
Then let me remind you.
In post 234 you wrote:
dennis780 writes:
Though in humans, the appendix is shrinking, in the past it would have produced cellulose strong enough to eat raw meat, and quite easily digest small rocks.
And when I quoted this, and pointed out that this was not true, you called me "handicapped".
It would therefore seem to be your "point", such as it is:
* That the appendix used to produce cellulose.
* That cellulose digests things.
* That there are different strengths of cellulose with respect to this imaginary digestive function.
* That some cellulose is "strong" enough to digest raw meat.
* That some cellulose is "strong" enough to digest small rocks.
* That anyone who disagrees with you about this is handicapped.

This message is a reply to:
 Message 248 by dennis780, posted 09-01-2010 6:00 AM dennis780 has replied

Replies to this message:
 Message 251 by dennis780, posted 09-01-2010 6:18 AM Dr Adequate has replied

Dr Adequate
Member (Idle past 314 days)
Posts: 16113
Joined: 07-20-2006


Message 252 of 752 (578226)
09-01-2010 6:24 AM
Reply to: Message 251 by dennis780
09-01-2010 6:18 AM


Oh. Well I'm definitely wrong.
Yeah. You see now why you should listen to the nice evolutionists?

This message is a reply to:
 Message 251 by dennis780, posted 09-01-2010 6:18 AM dennis780 has replied

Replies to this message:
 Message 253 by dennis780, posted 09-01-2010 6:32 AM Dr Adequate has not replied

Dr Adequate
Member (Idle past 314 days)
Posts: 16113
Joined: 07-20-2006


Message 254 of 752 (578229)
09-01-2010 6:51 AM
Reply to: Message 250 by dennis780
09-01-2010 6:14 AM


Where "incorrectness" and "damage" are assessed how? Thats how. I never claimed this was due to a loss. You asked me to give you examples of genetic damage and incorrect sequencing, and I did.
But in post 233, you said that this genetic damage and incorrect sequencing was the very definition of "genetic loss".
dennis780, post 233 writes:
quote:
though we would have to await your definition of "genetic loss".
Incorrectly sequenced nucleotides, or damaged codons should suffice for this discussion. Unless, you prefer using teaspoons again.
Got that? You say that "errors during transcription" constitute incorrectness and/or damage, and that this incorrectness and damage is the very definition of "genetic loss".
Therefore, you are saying that errors during transcription constitute genetic loss.
Right, but if I use that terminology, you would have attacked my word choice...
No.
What? Which message was the point made in?? I can't find it. You left off after asking me if HGT constitutes new genetic information...and I said yes...expecting you to make some sort of association between HGT and genetic origins.
Or was that the point?
To recap.
You agreed that antibiotic resistance acquired through HGT of plasmids constitutes a "genetic gain" (post 219).
You further, when pressed, agreed that if antibiotic resistance was also acquired through mutation, that would also have to be counted as a "genetic gain" (message 233).
I then pointed out that by doing experiments with clonal lines, we can demonstrate that such resistance does arise by mutation without HGT being implicated or indeed possible.
Unless you wish to go back on your own admissions, or dispute the experimental results, you must now admit that some mutations produce "genetic gain".
---
I still don't know what you think about horses, but as you say it is hardly relevant.

This message is a reply to:
 Message 250 by dennis780, posted 09-01-2010 6:14 AM dennis780 has replied

Replies to this message:
 Message 261 by dennis780, posted 09-02-2010 4:03 AM Dr Adequate has replied

Dr Adequate
Member (Idle past 314 days)
Posts: 16113
Joined: 07-20-2006


Message 262 of 752 (578626)
09-02-2010 6:21 AM
Reply to: Message 261 by dennis780
09-02-2010 4:03 AM


Genetic loss would be any sequence of dna that has been changed in any way that renders chemically useless nucleotide arrangements. These are just examples of these, which is what I thought you wanted.
I also said others. I was offering up examples of genetic loss...what is the problem? Do you need ALL causes of genetic loss to prove that genetic loss can happen? It's obvious that this does happen, and is a documented scientific fact. I'm not sure what you want exactly...
I had the impression that you were saying that all transcription errors were genetic loss. If you just mean those that cause a gene to cease functioning, that would be quite reasonable.
I'm confused, are you saying that HGT is the source for the origin of new information?
No, it's just a way of passing it around.
Or random mutation passed within families of specific organisms...because I already talked quite a bit about how HGT handicaps the organism in most cases...
But you said that HGT of antibiotic resistance was a "genetic gain".
And can I have the link again for the experiments on clonal lines?? I want to read it again. Or was that the E. Coli experiment you quoted earlier?
I couldn't be bothered to look through the thread, so I googled for another one. This was done on a clonal line of yeast. References are:
Francis, J.E., & Hansche, P.E. (1972) Directed evolution of metabolic pathways in microbial populations. I. Modification of the acid phosphatase pH optimum in Saccharaomyces cervisiae. Genetics, 70: 59-73.
Francis, J.E., & Hansche, P.E. (1973) Directed evolution of metabolic pathways in microbial populations. II. A repeatable adaptation in Saccharaomyces cervisiae. Genetics, 74:259-265.
The experiments are described here. Note the twist at the end (after 800 generations) --- I think it's amusing:
P.E. Hansche and J.C. Francis set up chemosats to allow evolution of a single clonal line of beer yeast in a phosphate limited (due to high pH) environment. (A chemostat is a device that allows the propagation of microorganisms in an extremely constant environment.) The yeast clones grew slowly for about the first 180 generations when there was an abrupt increase in population density. This was later shown to be due to better assimilation of the phosphate, presumably due to an improvement in the permease molecule. (Permease is an enzyme that controls what is allowed to come into the cell through the yeast's cell membrane.) After about 400 generations, a second improvement in cell growth rates occurred because of a mutation to the yeast's phosphatase (an enzyme that improves the cells ability to use phosphate). The phosphatase became more active overall, and its optimal pH (the pH where it is most active) was raised. Finally, a third mutant appeared after 800 generations that caused the yeast cells to clump. This raised the population density in the chemostat because individual cells were no longer being washed out of chemostat (which is one of the methods that the chemostat uses to maintain very uniform conditions) as quickly as they had prior to the mutation. (This is just speculation on my part, but I wonder if it wasn't under some similar conditions that multi-cellularity became favored over unicellularity - perhaps on a sea bed or river bottom.)
This experiment was repeated, and the same mutations occurred, but in different orders. Also, in one replication, the processing of phosphate was improved by a duplication of the gene that produces phosphatase. This is experimental evidence of an extremely important mechanism in evolutionary history! It is also a particularly elegant experiment because not only was all of this adaptation shown to occur in clonal lines (descended from a single individual), but the authors also determined the exact mutations that caused the improved adaptations by sequencing the genes and proteins involved.
Now, as you can see, they started with a single individual --- just one cell of yeast. Hence there is no possibility of the relevant genes merely being passed around by HGT before arising by mutation.

This message is a reply to:
 Message 261 by dennis780, posted 09-02-2010 4:03 AM dennis780 has replied

Replies to this message:
 Message 263 by Wounded King, posted 09-02-2010 8:47 AM Dr Adequate has not replied
 Message 271 by dennis780, posted 09-02-2010 10:39 PM Dr Adequate has replied

Dr Adequate
Member (Idle past 314 days)
Posts: 16113
Joined: 07-20-2006


Message 276 of 752 (578887)
09-02-2010 11:12 PM
Reply to: Message 271 by dennis780
09-02-2010 10:39 PM


No as I said before I agree with you that HGT can bring about new genetic information in an organism. But the information used must have a source. As well, when the selective conditions are removed, the genetic information (that was horizontally transferred) becomes redundant and is eventually discarded by the cells to enable them to survive among the faster-growing "wild-type" bacteria.
And if the selective conditions for humans being smart were removed, our species would become as dumb as monkeys.
That's evolution for you.
Between the negative effects that usually occur, and the information being discarded (as well as the the source of information not having an explanation) ...
Mu-ta-tion. Sheesh.
, HGT doesn't seem to be a plausible fit to origin of, or tool for, new complex chemical arrangements in DNA.
Whereas mutation does.
So then, are we not discussing the origin of new genetic material?
We are discussing it when we're talking about mutation, we're not discussing it when we're talking about HGT.
This does not conflict with the ID theory. The new pathway would still be based on existing pathway DNA. Generations over time did not "evolve" the permease pathway over time. It existed in the original cell.
Hello?
The improvement in the molecule was not present in the original cell. It arose through mutation.
By the way, if you know what "the ID theory" is, perhaps you could explain it to all the ID proponents out there.
This example does not tell us whether the mutation was due to genetic loss or gain, so I really don't know how to comment.
According to you, "genetic loss" is when a gene stops working. The gene did not stop working.
Existing information.
Unlike the other three beneficial changes.
I'm still unclear as to whether or not we are debating the origin of DNA or not...or if mutations can result in new information. Because I have already conceded that this is possible, but that HGT is not it, since it does not explain the origin of the information.
These changes to the DNA are demonstrably caused by mutation and not HGT.

This message is a reply to:
 Message 271 by dennis780, posted 09-02-2010 10:39 PM dennis780 has replied

Replies to this message:
 Message 278 by dennis780, posted 09-03-2010 7:48 AM Dr Adequate has replied

Newer Topic | Older Topic
Jump to:


Copyright 2001-2023 by EvC Forum, All Rights Reserved

™ Version 4.2
Innovative software from Qwixotic © 2024